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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGCATTTGGGAGAGAACATGGTGAGGACGATCGCTATGGACGGTACGGAAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACTgtgagctctcttatctcaatgtgctaatcgtcatctgttaaaatatgtaaatttatggattttgataattctctagatctatgctcaatctcatcacttt...

Basic information

species Vitis vinifera
transcript Vv17s0000g02900.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g02900.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os05g47980.1 (Oryza sativa), 5'ss of exon 1
TCAGCATTTGGGAGAGAACATGGTGAGGACGATCGCTATGGACGGTACGGAAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACTgtgagctctcttatctcaatgtgctaatcgtcatctgt--taaaatatgtaaatttatggattttgataattctctagatctatgctcaatctcatcacttt
 |||||  | || |||||||||||| | || |||||||||||||| || || ||||||||| | || ||| | ||||||||||| || || || |||||||| |   | |    | |  | | || ||| |  | ||   |   | || | | ||  ||   | |   |        ||   |   |  |||| |   || |
GCAGCACCTTGGCGAGAACATGGTGCGCACCATCGCTATGGACGGGACTGAGGGGCTTGTCCGCGGTCAGCGCGTCCTCAACACCGGCTCCCCAATCACTgtaatgcccccccgcccg-tcttctcatccttgtttgcgatcgtacatttcatttcgtgttgtctccgaccagatctgacgaaatgtggatct-actgctgt

upper sequence: Vv17s0000g02900.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G021331_T01 (Zea mays), 5'ss of exon 1
TCAGCATTTGGGAGAGAACATGGTGAGGACGATCGCTATGGACGGTACGGAAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACTgtgagctctcttatctcaatgtgctaatcgtcatctgttaaaatatgtaaatttatggattttgataattctctagatctatgctcaatctcatcacttt----
 |||||  | || |||||||||||| | || |||||||||||||| ||||| ||||| ||| | || ||| | |||||||||||||| || || ||||| |||||  | |           || | || |   |   ||  | |  ||     || ||||     | ||     | ||  |  |  |||    | |  ||    
GCAGCACCTTGGCGAGAACATGGTGCGCACCATCGCTATGGACGGCACGGAGGGGCTCGTCCGCGGCCAGCGCGTCCTCAACACTGGCTCCCCCATCACCgtgaggacgccctctatttcttggttatggctgtgctttctatttcgtggcggtacggatcgatctgatg----aaatgcagaccgaatagtgttagatttgat

upper sequence: Vv17s0000g02900.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G113408_T03 (Zea mays), 5'ss of exon 1
TCAGCATTTGGGAGAGAACATGGTGAGGACGATCGCTATGGACGGTACGGAAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACTgtgag----ctctcttatctcaatgtgctaatcgtcatctgttaaaatatgtaaatttatggattttgataattctctagatctatgctcaatctcatcacttt
 |||||  | || |||||||||||| | || |||||||||||||| ||||| ||||| ||| | || ||| | |||||||||||||| || || ||||| ||  |    | |||   |       || | ||  |  |   ||  | |  || |   || ||||     | ||     | || ||      ||    |   |||
GCAGCACCTTGGCGAGAACATGGTGCGCACCATCGCTATGGACGGCACGGAGGGGCTCGTCCGCGGCCAGCGCGTCCTCAACACTGGCTCCCCCATCACCgtagggacaccctccgtttcttccttggttatgattgtgctttttatttcgtgacggtacggatcgatctgatg----aaatgtagatctgatagttttgattt

upper sequence: Vv17s0000g02900.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: PP1S310_30V6.1 (Physcomitrella patens), 5'ss of exon 1
TCAGCATTTGGGAGAGAACATGGTGAGGACGATCGCTATGGACGGTACGGAAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACTgtgagctctcttatc---tcaatgtgctaatcgtca-----tctgttaaaatatg-taaatttatggattttgataattctctagatctatgctcaatctcatcacttt
 |||||||||||||||||||  ||| ||||||| ||||||||    || || ||||||||  | || ||| ||||  | ||||| || ||||||||||  |||||  |  || |    |  ||||| |  | || |     | | ||    | || | |||||   |  |   |   |  |||    |  || |  ||  ||       
GCAGCATTTGGGAGAGAACACTGTGCGGACGATTGCTATGGAAACGACCGATGGGCTTGTTCGCGGGCAGCGAGTGTTGAACACCGGGTCTCCTATCATGgtgagaacctttgttgagtggatgtggtggtggttaggatgtttattttgttttggtgaattttccgggtcgaaggctcttctgtgcc--tgtttgattgca-------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351023372|gb|FQ432755.1|FQ432755
EST:     AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACT                         GTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
genomic: AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACTgtgagctctc ... tgggctttagGTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
EST: gi|110732337|gb|EE107534.1|EE107534
EST:     AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACT                         GTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
genomic: AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACTgtgagctctc ... tgggctttagGTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
EST: gi|110724937|gb|EE101202.1|EE101202
EST:     AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACT                         GTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
genomic: AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACTgtgagctctc ... tgggctttagGTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
EST: gi|351022146|gb|FQ438731.1|FQ438731
EST:     AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACT                         GTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
genomic: AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACTgtgagctctc ... tgggctttagGTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
EST: gi|161707022|gb|FC055130.1|FC055130
EST:     AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACT                         GTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
genomic: AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACTgtgagctctc ... tgggctttagGTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
EST: gi|351019677|gb|FQ439494.1|FQ439494
EST:     AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACT                         GTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
genomic: AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACTgtgagctctc ... tgggctttagGTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
EST: gi|110688946|gb|EE068082.1|EE068082
EST:     AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACT                         GTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
genomic: AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACTgtgagctctc ... tgggctttagGTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
EST: gi|37186066|gb|CF605419.1|CF605419
EST:     AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACT                         GTTCCTGTGGGTAGGGCAACCCTTGGACGG
genomic: AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACTgtgagctctc ... tgggctttagGTTCCTGTGGGTAGGGCAACCCTTGGACGG
EST: gi|110389138|gb|EC953954.1|EC953954
EST:     AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACATTGGTTCTCCTATCACT                         GTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
genomic: AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACTgtgagctctc ... tgggctttagGTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
EST: gi|110359453|gb|EC920958.1|EC920958
EST:     AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACT                         GTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
genomic: AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACTgtgagctctc ... tgggctttagGTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
EST: gi|351015254|gb|FQ445538.1|FQ445538
EST:     AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACT                         GTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
genomic: AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACTgtgagctctc ... tgggctttagGTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
EST: gi|110702280|gb|EE080812.1|EE080812
EST:     AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACT                         GTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
genomic: AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACTgtgagctctc ... tgggctttagGTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
EST: gi|71859328|gb|DT008383.1|DT008383
EST:     AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACT                         GTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
genomic: AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACTgtgagctctc ... tgggctttagGTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
EST: gi|351047137|gb|FQ454747.1|FQ454747
EST:     AAGGGCTTGCCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACT                         GTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
genomic: AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACTgtgagctctc ... tgggctttagGTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
EST: gi|351025232|gb|FQ433649.1|FQ433649
EST:     AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACT                         GTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
genomic: AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACTgtgagctctc ... tgggctttagGTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
EST: gi|161721398|gb|FC071064.1|FC071064
EST:     AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACT                         GTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
genomic: AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACTgtgagctctc ... tgggctttagGTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
EST: gi|37185276|gb|CF604629.1|CF604629
EST:     AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACT                         GTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
genomic: AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACTgtgagctctc ... tgggctttagGTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
EST: gi|161718420|gb|FC064789.1|FC064789
EST:     AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACT                         GTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
genomic: AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACTgtgagctctc ... tgggctttagGTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
EST: gi|351027762|gb|FQ446929.1|FQ446929
EST:     AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACT                         GTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
genomic: AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACTgtgagctctc ... tgggctttagGTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
EST: gi|349823703|gb|FQ415113.1|FQ415113
EST:     AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACT                         GTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
genomic: AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACTgtgagctctc ... tgggctttagGTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
EST: gi|351028401|gb|FQ427297.1|FQ427297
EST:     AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACT                         GTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
genomic: AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACTgtgagctctc ... tgggctttagGTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
EST: gi|351026662|gb|FQ436315.1|FQ436315
EST:     AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACT                         GTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
genomic: AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACTgtgagctctc ... tgggctttagGTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
EST: gi|349826477|gb|FQ418568.1|FQ418568
EST:     AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACT                         GTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
genomic: AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACTgtgagctctc ... tgggctttagGTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
EST: gi|352789612|gb|FQ476210.1|FQ476210
EST:     AAGGGCCTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACT                         GTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
genomic: AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACTgtgagctctc ... tgggctttagGTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
EST: gi|110726783|gb|EE102867.1|EE102867
EST:     AAGGGCTTGTCAGAAGACAGAGAGTCCTCAACACTGGTTCTCCTATCACT                         GTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
genomic: AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACTgtgagctctc ... tgggctttagGTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
EST: gi|349823820|gb|FQ415231.1|FQ415231
EST:     AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACT                         GTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
genomic: AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACTgtgagctctc ... tgggctttagGTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
EST: gi|351030186|gb|FQ432124.1|FQ432124
EST:     AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACT                         GTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
genomic: AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACTgtgagctctc ... tgggctttagGTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
EST: gi|161719858|gb|FC069012.1|FC069012
EST:     AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACT                         GTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
genomic: AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACTgtgagctctc ... tgggctttagGTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
EST: gi|161715733|gb|FC066137.1|FC066137
EST:     AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACT                         GTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
genomic: AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACTgtgagctctc ... tgggctttagGTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
EST: gi|351022190|gb|FQ438775.1|FQ438775
EST:     AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACT                         GTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
genomic: AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACTgtgagctctc ... tgggctttagGTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
EST: gi|351030612|gb|FQ437038.1|FQ437038
EST:     AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACT                         GTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
genomic: AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACTgtgagctctc ... tgggctttagGTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
EST: gi|110356708|gb|EC919733.1|EC919733
EST:     AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACT                         GTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
genomic: AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACTgtgagctctc ... tgggctttagGTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
EST: gi|352782351|gb|FQ470254.1|FQ470254
EST:     AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACT                         GTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
genomic: AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACTgtgagctctc ... tgggctttagGTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
EST: gi|352787189|gb|FQ477809.1|FQ477809
EST:     AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACT                         GTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
genomic: AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACTgtgagctctc ... tgggctttagGTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
EST: gi|349826538|gb|FQ418629.1|FQ418629
EST:     AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACT                         GTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
genomic: AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACTgtgagctctc ... tgggctttagGTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
EST: gi|352773165|gb|FQ470780.1|FQ470780
EST:     AAGGGCTTGTCAGAAGACAGAGAGTCCTCAACACTGGTTCTCCTATCACT                         GTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
genomic: AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACTgtgagctctc ... tgggctttagGTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
EST: gi|110698394|gb|EE075844.1|EE075844
EST:     AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACT                         GTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
genomic: AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACTgtgagctctc ... tgggctttagGTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
EST: gi|351022974|gb|FQ428883.1|FQ428883
EST:     AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACT                         GTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
genomic: AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACTgtgagctctc ... tgggctttagGTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
EST: gi|351040271|gb|FQ425357.1|FQ425357
EST:     AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACT                         GTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
genomic: AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACTgtgagctctc ... tgggctttagGTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
EST: gi|352795075|gb|FQ477185.1|FQ477185
EST:     AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACT                         GTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
genomic: AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACTgtgagctctc ... tgggctttagGTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
EST: gi|351028760|gb|FQ433190.1|FQ433190
EST:     AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACT                         GTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
genomic: AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACTgtgagctctc ... tgggctttagGTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
EST: gi|71860596|gb|DT009651.1|DT009651
EST:     AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACT                         GTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
genomic: AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACTgtgagctctc ... tgggctttagGTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
EST: gi|349823819|gb|FQ415230.1|FQ415230
EST:     AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACT                         GTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG
genomic: AAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACTgtgagctctc ... tgggctttagGTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCAGCATTTGGGAGAGAACATGGTGAGGACGATCGCTATGGACGGTACGGAAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACTgtgagctctcttatctcaatgtgctaatcgtcatctgttaaaatatgtaaatttatggattttgataattctctagatctatgctcaatctcatcacttt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA