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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAACTTCCTCGTCTTTGAAACAACCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAATGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAGgtaaataatcttcagaaaaattttctactacattgttatttatataaacgttttgtaatgaaaagatctatgaaatagaatactggagtaaccgttatgtttttatag

Basic information

species Vitis vinifera
transcript Vv17s0000g02780.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g02780.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA05G30830.1 (Glycine max), 5'ss of exon 13
TGGAACTTCCTCGTCTTTGAAACAACCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAATGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAGgtaaataatcttcagaaaaattttctactacattgttatttatataaacgttttgtaatgaaaagatctatgaaatagaatactggagtaaccgttatgtttttatag
                         |||||||||||||||||||||||||| |||||||| |||||  ||||||||| ||||||||| || ||||| ||||||| |  | |||    |   || ||  || |||          ||||   ||| || | | |    | |||   ||  |||     ||     || || |||| |||
-------------------------CCTGCCCATGAGAAAATTGGAGTTGTTGATTCTCAGTGGATTATTCATCAAAGTGTTCCCTCACTAGGGAATCAGgtaatttgttttccatgattattactgttagatt----------taaatagttt-tactcatattgccgatg---taagatatgtatgtttttctt-tgcttttgtag

upper sequence: Vv17s0000g02780.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA08G14040.1 (Glycine max), 5'ss of exon 13
TGGAACTTCCTCGTCTTTGAAACAACCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAATGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAGgtaaataatcttcagaaaaattttctactacattgttatttatataaacgttttgtaatgaaaagatctatgaaatagaatactggagtaaccgttatgtttttatag
                         |||||||| ||||||||||||||||| |||||||| |||||  ||||||||| ||||||||| || ||||| ||||||| |  | |||    |   || ||  || |||           ||  |||||    | | |    | |||   ||  |||     ||     || || |||| |||
-------------------------CCTGCCCACGAGAAAATTGGAGTTGTTGATTCTCAGTGGATTATTCATCAAAGTGTTCCCTCACTAGGGAATCAGgtaatttgttttccatgattattactgttagatt----------caatagttttac--tcatatagccgatg---taagatatgtatgtttttctt-tgcttttgtag

upper sequence: Vv17s0000g02780.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA18G01710.1 (Glycine max), 5'ss of exon 13
TGGAACTTCCTCGTCTTTGAAACAACCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAATGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAGgtaaataatcttcagaaaaattttctactacattgttatttatataaacgttttgtaatgaaaagatctatgaaatagaatactggagtaaccgttatgtttttatag
                         |||||||||||||| ||||||||||| |||||||| ||||| ||||| |||  | ||||||| || ||||| ||||||  |  | |      |  | |            || ||||   |||  | | |   | |     | ||||      |||| |       || ||   | |||  ||
-------------------------CCTGCCCATGAGAAGATTGGAGTTGTTGATTCTCAGTGGATTGTTCACCAAGGTCTTCCCTCACTAGGGAATCAGgtactttgtttgtcatgatttctctagacttgacatt-tttactcaaaaatctggctgtaa-----tttatgcttattaatatt-------ccttt---tctttgcag

upper sequence: Vv17s0000g02780.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA11G37770.1 (Glycine max), 5'ss of exon 13
TGGAACTTCCTCGTCTTTGAAACAACCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAATGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAGgtaaataatcttcagaaaaattttctactacattgttatttat-ataaacgttttgtaatgaaaagatctatgaaatagaatactggagtaaccgttatgtttttatag
                         ||||| |||||||| ||||||||||| |||||||| ||||| ||||| |||  | ||||||| || ||||| ||||||  |  | | |  |  | |     |||||  |    | ||  |  ||     | | |  |||| | ||||           ||| ||                    
-------------------------CCTGCACATGAGAAGATTGGAGTTGTTGATTCTCAGTGGATTGTTCACCAAGGTATTCCCTCACTAGGGAATCAGgtattttctttacc-atgagtccatgactactctagagtctaagactaaaacaatttcactaaaaaaactattctccttttctctgcag--------------------

upper sequence: Vv17s0000g02780.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA08G14050.1 (Glycine max), 5'ss of exon 11
TGGAACTTCCTCGTCTTTGAAACAACCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAATGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAGgtaaataatcttcagaaaaattttctactacattgttatttatataaacgttttgtaatgaaaagatctatgaaatagaatactggagtaaccgttatgtttttatag
                         |||||||||||||| ||||||||||| ||| |||| ||||| || || |||  | ||||||| || ||||| ||||||| || | | |    |  ||| ||| ||  || | || |  || |      |  ||||| ||  | |||  |||    || | |  |  | |  |   ||    ||
-------------------------CCTGCCCATGAGAAGATTGGAGTTGTTGATACTCAGTGGATTGTGCACCAAGGTATTCCCTCACTAGGGAATCAGgtaattattttcccatgatttttcctattatgtt-taatgttaattatttcactcaaatgagaatgtatatataattct-tatttgttttcctgc-acacttg-gcag

upper sequence: Vv17s0000g02780.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA05G30850.1 (Glycine max), 5'ss of exon 11
TGGAACTTCCTCGTCTTTGAAACAACCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAATGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAGgtaaataatcttcagaaaaattttctactacattgtt--attta--tataaacgttttgt---aatgaaaagatctatgaaatagaatactggagtaaccgttatgtttttatag---
                         |||||||||||||| ||||||||||| ||| |||| ||||| || || |||  | ||||||| || ||||| ||||||| || | |||    |   ||  | |||   ||||  |||||  | |||   |||      |||| ||   | | |  ||||      ||   |     |  | | |   | |   
-------------------------CCTGCCCATGAGAAGATTGGAGTTGTTGATGCTCAGTGGATTGTGCACCAAGGTATTCCCTCACTAGGGAATCAGgtaattatttttctatgatcattgttcctattatgtttaatttaattctaattatttcactcaaatgcaactgtatgtataatacttatttgtttttgttatcctctgtgcttggtag

upper sequence: Vv17s0000g02780.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT1G67850.2 (Arabidopsis thaliana), 5'ss of exon 13
TGGAACTTCCTCGTCTTTGAAACAACCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAATGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAGgtaaataatcttcagaaaaattttctactacattgttatttatataaacgttttgtaatgaaaagatctatgaaatagaatactggagtaaccgttatgtttttatag
                         ||||| |||||||| || ||||| || |||||||||||| ||||||||||| || |||| || ||||| ||||| ||||||      |   | || | ||| |||  |   | || |  |   |  |  | |||   |   | | |    |    ||                          
-------------------------CCTGCACATGAGAAGATAGGAGTAGTTGATTCTCAATGGGTCGTTCATCAATCTTTTCCTTCCCTTGGCAACCAAgtaaat-----cccatagaactctct-ctatgtccattttaacttcttctctcagaaatctgattctttttcgcttgatgtag-------------------------

upper sequence: Vv17s0000g02780.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT3G26440.4 (Arabidopsis thaliana), 5'ss of exon 12
TGGAACTTCCTCGTCTTTGAAACAACCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAATGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAGgtaaataatcttcagaaaaattttctactacatt-------gttatttatataaacgttttgtaatgaaaagatctatgaaatagaatactggagtaaccgttatgtttttatag
                         ||||| |||||||| ||||| ||||| ||||||||||||||| |||||||||   |||| ||  | || | |||||| | |||       ||   | |  | ||| | |        |||||||        |||  | ||      | |||||| ||    |     |   |  | |  |         
-------------------------CCTGCACATGAGAAGATTGGTGTTGTGGATTCTCAATGGATCATTCATCAAAAGATTCCTTCTTTAGGCAGCCAGgttattaaatgatcaaactttatcttcctatactcaactacattatttactagcttctttgttcatagttttaactatgagatgatctctcaaatacattgatcag---------

upper sequence: Vv17s0000g02780.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT1G13000.2 (Arabidopsis thaliana), 5'ss of exon 12
TGGAACTTCCTCGTCTTTGAAACAACCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAATGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAGgtaaataatcttcagaaaaattttctactacattgttatttatataaacgttttgtaatgaaaagatctatgaaatagaatactggagtaaccgttatgtttttatag-
                         ||||| |||||||| || |||||||| ||||||||||||||| | |||||| || |||| ||  | || | ||||||      |||| | || |  ||   |    |||    |   || ||   || |||  ||   | || | |||   ||| |  | |       ||| | ||||||    
-------------------------CCTGCACATGAGAAGATAGGAGTTGTGGATTCTCAATGGATCATACATCAATCTCTTCCTTCTTTAGGCAGCCAGgt------tcttgacaataccttctca----att----tcagtacaagtattctgttttgttcatatat-tgattcagattttttg-------gttttctttttaccag

upper sequence: Vv17s0000g02780.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: PP1S70_58V6.2 (Physcomitrella patens), 5'ss of exon 13
TGGAACTTCCTCGTCTTTGAAACAACCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAATGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAGgtaaataatcttcagaaaaattttctactacattgttatttatataaacgtt-ttgtaatgaaaagat-ctatgaaatagaatactggagtaaccgttatgtttttatag
                         ||||| ||||| |||||||||||||||||| |||| ||||||   ||||    ||| |  || ||    | |  |||   |  || ||| ||  |||  ||  | |  || |  ||     | ||   || |||||   | || ||||    ||   |  |  |||||  |  || |        
-------------------------CCTGCACATGATAAAATTGGAGTTGTAGATGCTCAGTGGATCCGACATCGGGTTGTGCTATCTCTAAATAGCTCGgtttgtgttcctcacaaccattcactcgttctatgattcttccgagatcgcagttctaatgtcgaaatgctattcgttatggt-ttatagtaaa-gcaatat--------