Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCACCTCAACCTCCGGCAGCCTCCGAGGCACACGTAGCTCATGCCGCCAACCCTACCCCTAGCCACGGACCACCGCACAACCACCCGCCCTACGCCGAGgtaaaaaaaaaaaaggagggagagaccagcaaaagggaaaatccagaatatttgtttgattttgtgtagaaaccctaattttttttttgaatttttggggcttgcag

Basic information

species Vitis vinifera
transcript Vv17s0000g02550.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110684628|gb|EE062127.1|EE062127
EST:     ACCCTACCCCTAGCCACGGACCACCGCACAACCACCCGCCCTACGCCGAG                         ATGATAACAACGGCAATTGGGGCTTTGAATGAGAGAACGGGGTCGAGTAAG
genomic: ACCCTACCCCTAGCCACGGACCACCGCACAACCACCCGCCCTACGCCGAGgtaaaaaaaa ... gggcttgcagATGATAACAACGGCAATTGGGGCTTTGAATGAGAGAACGGGGTCGAGTAAG
EST: gi|161718772|gb|FC066349.1|FC066349
EST:     ACCCTACCCCTAGCCACGGACCACCGCACAACCACCCGCCCTACGCCGAG                         ATGATAACAACGGCAATTGGGGCTTTGAATGAGAGAACGGGGTCGAGTAAA
genomic: ACCCTACCCCTAGCCACGGACCACCGCACAACCACCCGCCCTACGCCGAGgtaaaaaaaa ... gggcttgcagATGATAACAACGGCAATTGGGGCTTTGAATGAGAGAACGGGGTCGAGTAAG
EST: gi|161708001|gb|FC057794.1|FC057794
EST:     ACCCTACCCCTAGCCACGGACCACCGCACAACCACCCGCCCTACGCCGAG                         ATGATAACAACGGCAATTGGGGCTTTGAATGAGAGAACGGGGTCGAGTAAG
genomic: ACCCTACCCCTAGCCACGGACCACCGCACAACCACCCGCCCTACGCCGAGgtaaaaaaaa ... gggcttgcagATGATAACAACGGCAATTGGGGCTTTGAATGAGAGAACGGGGTCGAGTAAG
EST: gi|110701411|gb|EE078951.1|EE078951
EST:     ACCCTACCCCTAGCCACGGACCACCGCACAACCACCCGCCCTACGCCGAG                         ATGATAACAACGGCAATTGGGGCTTTGAATGAGAGAACGGGGTCGAGTAAG
genomic: ACCCTACCCCTAGCCACGGACCACCGCACAACCACCCGCCCTACGCCGAGgtaaaaaaaa ... gggcttgcagATGATAACAACGGCAATTGGGGCTTTGAATGAGAGAACGGGGTCGAGTAAG
EST: gi|110685806|gb|EE062846.1|EE062846
EST:     ACCCTACCCCTAGCCACGGACCACCGCACAACCACCCGCCCTACGCCGAG                         ATGATAACAACGGCAATTGGGGCTTTGAATGAGAGAACGGGGTCGAGTAAG
genomic: ACCCTACCCCTAGCCACGGACCACCGCACAACCACCCGCCCTACGCCGAGgtaaaaaaaa ... gggcttgcagATGATAACAACGGCAATTGGGGCTTTGAATGAGAGAACGGGGTCGAGTAAG
EST: gi|110689203|gb|EE065224.1|EE065224
EST:     ACCCTACCCCTAGCCACGGACCACCGCACAACCACCCGCCCTACGCCGAG                         ATGATAACAACGGCAATTGGGGCTTTGAATGAGAGAACGGGGTCGAGTAAG
genomic: ACCCTACCCCTAGCCACGGACCACCGCACAACCACCCGCCCTACGCCGAGgtaaaaaaaa ... gggcttgcagATGATAACAACGGCAATTGGGGCTTTGAATGAGAGAACGGGGTCGAGTAAG
EST: gi|161715052|gb|FC062731.1|FC062731
EST:     ACCCTACCCCTAGCCACGGACCACCGCACAACCACCCGCCCTACGCCGAG                         ATGATAACAACGGCAATTGGGGCTTTGAATGAGAGAACGGGGTCGAGTAAG
genomic: ACCCTACCCCTAGCCACGGACCACCGCACAACCACCCGCCCTACGCCGAGgtaaaaaaaa ... gggcttgcagATGATAACAACGGCAATTGGGGCTTTGAATGAGAGAACGGGGTCGAGTAAG
EST: gi|161720314|gb|FC071167.1|FC071167
EST:     ACCCTACCCCTAGCCACGGACCACCGCACAACCACCCGCCCTACGCCGAG                         ATGATAACAACGGCAATTGGGGCTTTGAATGAGAGAACGGGGTCGAGTAAG
genomic: ACCCTACCCCTAGCCACGGACCACCGCACAACCACCCGCCCTACGCCGAGgtaaaaaaaa ... gggcttgcagATGATAACAACGGCAATTGGGGCTTTGAATGAGAGAACGGGGTCGAGTAAG
EST: gi|351033231|gb|FQ462003.1|FQ462003
EST:     ACCCTACCCCTAGCCACGGACCACCGCACAACCACCCGCCCTACGCCGAG                         ATGATAACAACGGCAATTGGGGCTTTGAATGAGAGAACGGGGTCGAGTAAG
genomic: ACCCTACCCCTAGCCACGGACCACCGCACAACCACCCGCCCTACGCCGAGgtaaaaaaaa ... gggcttgcagATGATAACAACGGCAATTGGGGCTTTGAATGAGAGAACGGGGTCGAGTAAG
EST: gi|18458797|gb|BM437075.1|BM437075
EST:     ACGGACCACCGCACAACCACCCGCCCTACGCCGAG                         ATGATAACAACGGCAATTGGGGCTTTGAATGAGAGAACGGGGTCGAGTAAG
genomic: ACGGACCACCGCACAACCACCCGCCCTACGCCGAGgtaaaaaaaa ... gggcttgcagATGATAACAACGGCAATTGGGGCTTTGAATGAGAGAACGGGGTCGAGTAAG