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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGGTTGAAGTTGGGAATGGACGGAGAGGAGTTGACGGAGCAAGAAACTGCGTTGTATGATCGCCAAATTAGGGTTTGGGGCGTCGATGCCCAACGCAGgtatgttctttaattcttccaaaagaaaagaaaaaaaaaaaacttcttcattttatgattaattttgtttgcttggtttag

Basic information

species Vitis vinifera
transcript Vv17s0000g01270.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g01270.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT4G24940.1 (Arabidopsis thaliana), 5'ss of exon 1
GCAGGTTGAAGTTGGGAATGGACGGAGAGGAGTTGACGGAGCAAGAAACTGCGTTGTATGATCGCCAAATTAGGGTTTGGGGCGTCGATGCCCAACGCAGgt-atgttctttaattcttccaaaagaaaagaaaaaaaaaaaacttcttcattttatgattaattttgtttgcttggtttag------------------
  || ||||| ||||||||||||||||| ||| | || ||||| || ||||| ||||| || ||||| ||||||||||||||||   |||| ||  | |||| |  ||||      |||         || |   ||       |||    || ||   |||| |   |||     |  |                    
ATAGCTTGAATTTGGGAATGGACGGAGAAGAGCTTACCGAGCAGGAGACTGCCTTGTACGACCGCCAGATTAGGGTTTGGGGCGCTAATGCTCAGAGAAGgttactttctcatccccttgttcttttcaacactcaatcttgttttcacttttctaaatttaagtgcttttaagctgcatcatctcaattatgatttgag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26256883|gb|CA807946.1|CA807946
EST:     GCGTTGTATGATCGCCAAATTAGGGTTTGGGGCGTCGATGCCCAACGCAG                         ATTGAGCAAAGCCCATATCTTAGTCAGTGGAATGAAAGGCACTGTTGTTGA
genomic: GCGTTGTATGATCGCCAAATTAGGGTTTGGGGCGTCGATGCCCAACGCAGgtatgttctt ... cttggtttagATTGAGCAAAGCCCATATCTTAGTCAGTGGAATGAAAGGCACTGTTGTTGA
EST: gi|351053900|gb|FQ441666.1|FQ441666
EST:     GCGTTGTATGATCGCCAAATTAGGGTTTGGGGCGTCGATGCCCAACGCAG                         ATTGAGCAAAGCCCATATCTTAGTCAGTGGAATGAAAGGCACTGTTGTTGA
genomic: GCGTTGTATGATCGCCAAATTAGGGTTTGGGGCGTCGATGCCCAACGCAGgtatgttctt ... cttggtttagATTGAGCAAAGCCCATATCTTAGTCAGTGGAATGAAAGGCACTGTTGTTGA
EST: gi|351035749|gb|FQ463594.1|FQ463594
EST:     GCGTTGTATGATCGCCAAATTAGGGTTTGGGGCGTCGATGCCCAACGCAG                         ATTGAGCAAAGCCCATATCTTAGTCAGTGGAATGAAAGGCACTGTTGTTGA
genomic: GCGTTGTATGATCGCCAAATTAGGGTTTGGGGCGTCGATGCCCAACGCAGgtatgttctt ... cttggtttagATTGAGCAAAGCCCATATCTTAGTCAGTGGAATGAAAGGCACTGTTGTTGA