Sequence
atgc intronic sequence ATGC exonic sequenceGAGCCAACGAGGGTGGCCGTCGTGGTTGTTGGACGCCCTTGGTGACGGAATCCAGGATTGGACTCCTCGCTGCGCCAACTCCTTCGAGAAGCTCGATAAGgtagtaatgattcgcaaaccctagctaaaagatgttaattagtactaatcactgatgtttagcatctgattcatagattttttgtttgattaatctttgtttag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g00620.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA06G17460.1 (Glycine max), 5'ss of exon 1
GAGCCAACGAGGGTGGCCGTCGTGGTTGTTGGACGCCCTTGGTGACGGAATCCAGGATTGGACTCCTCGCTGCGCCAACTCCTTCGAGAAGCTCGATAAGg----tagtaatgattcgcaaaccctagctaaaagatgtta----attagtactaatcactgatgtttagcatctgattcatagattttttgtt-tgattaatctttgtttag------------
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CACGCAACAGGGATGGCCTTCGTGGCTGATGGCCGTCGCCGGCGAAGCCATCGGAGACTGGACTCCTCGTCGCGCCAACACCTTCGAGAAGCTCGCTAAGgttcttaaaaaaaaacctttttttttattttagttttattataaaattaaaaaaaagaaaagaaaatggatctatttttagtaactgttatgttgtgtgttgttgatgatgatgatgttgttcag
upper sequence: Vv17s0000g00620.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA04G37630.1 (Glycine max), 5'ss of exon 1
GAGCCAACGAGGGTGGCCGTCGTGGTTGTTGGACGCCCTTGGTGACGGAATCCAGGATTGGACTCCTCGCTGCGCCAACTCCTTCGAGAAGCTCGATAAGgt-------agtaatgattcgcaa------accctag-----ctaaaagatgttaattagtactaatcactgatg---tttagcatctgattcatagattttttgtt--tgat-taatctttgtttag
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CACGCAGCAGGGATGGCCGTCGTGGCTGATGGCCGTAGCCGGCGAAGCCATCGGCGATTGGACTCCTCGTCGCGCCAACACTTTCGAGAAGCTCGCTAAGgttctttaaaaaaactaattttaattatttattctcgttttattgtaaaattttaaaaaaaaatgaaaatggatatattttagtaacagtttgttatgttatgtgttgttgttgttgttgttgttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161715873|gb|FC067452.1|FC067452EST: TCCAGGATTGGACTCCTCGCTGCGCCAACTCCTTCGAGAAGCTCGATAAG ATCGGCCAAGGAACGTACAGCAATGTTTATAAAGCAAGGGATCTAATTACA
genomic: TCCAGGATTGGACTCCTCGCTGCGCCAACTCCTTCGAGAAGCTCGATAAGgtagtaatga ... ctttgtttagATCGGCCAAGGAACGTACAGCAATGTTTATAAAGCAAGGGATCTAATTACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGCCAACGAGGGTGGCCGTCGTGGTTGTTGGACGCCCTTGGTGACGGAATCCAGGATTGGACTCCTCGCTGCGCCAACTCCTTCGAGAAGCTCGATAAGgtagtaatgattcgcaaaccctagctaaaagatgttaattagtactaatcactgatgtttagcatctgattcatagattttttgtttgattaatctttgtttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC