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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTAAAGGCGACAGCCTCACGCATTTGATCGGAACTATTCCTGGGCCCATGGGCACGCCCTACGAAGGGGGCATCTTCCAAATCGACATCGTTTTGCCTGgtatataatgattattgttgctgccgttgatttatttatttctttgaattcttgtgctgaggactctgcttttagcagtgtattgtgattggggtttcgt...

Basic information

species Vitis vinifera
transcript Vv17s0000g00610.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161716905|gb|FC068127.1|FC068127
EST:     GGGCACGCCCTACGAAGGGGGCATCTTCCAAATCGACATCGTTTTGCCTG                         ATGGGTACCCTTTTGAGCCTCCAAGAATGCAATTTGCCACGAAAGTTTG
genomic: GGGCACGCCCTACGAAGGGGGCATCTTCCAAATCGACATCGTTTTGCCTGgtatataatg ... ttttttgcagATGGGTACCCTTTTGAGCCTCCAAGAATGCAATTTGCCACGAAAGTTTG
EST: gi|30298293|gb|CB975087.1|CB975087
EST:     GGGCACGCCCTACGAAGGGGGCATCTTCCAAATCGACATCGTTTTGCCTG                         ATGGGTACCCTTTTGAGCCTCCAAGAATGCAATTTGCCACGAAAGTTTG
genomic: GGGCACGCCCTACGAAGGGGGCATCTTCCAAATCGACATCGTTTTGCCTGgtatataatg ... ttttttgcagATGGGTACCCTTTTGAGCCTCCAAGAATGCAATTTGCCACGAAAGTTTG
EST: gi|294965161|gb|GW836992.1|GW836992
EST:     GGGCACGCCCTACGAAGGGGGCATCTTCCAAATCGACATCGTTTTGCCTG                         ATGGGTACCCTTTTGAGCCTCCAAGAATGCAATTTGCCACGAAAGTTTG
genomic: GGGCACGCCCTACGAAGGGGGCATCTTCCAAATCGACATCGTTTTGCCTGgtatataatg ... ttttttgcagATGGGTACCCTTTTGAGCCTCCAAGAATGCAATTTGCCACGAAAGTTTG
EST: gi|110391172|gb|EC956130.1|EC956130
EST:     GGGCACGCCCTACGAAGGGGGCATCTTCCAAATCGACATCGTTTTGCCTG                         ATGGGTACCCTTTTGAGCCTCCAAGAATGCAATTTGCCACGAAAGTTTG
genomic: GGGCACGCCCTACGAAGGGGGCATCTTCCAAATCGACATCGTTTTGCCTGgtatataatg ... ttttttgcagATGGGTACCCTTTTGAGCCTCCAAGAATGCAATTTGCCACGAAAGTTTG
EST: gi|110396526|gb|EC962216.1|EC962216
EST:     GGGCACGCCCTACGAAGGGGGCATCTTCCAAATCGACATCGTTTTGCCTG                         ATGGGTACCCTTTTGAGCCTCCAAGAATGCAATTTGCCACGAAAGTTTG
genomic: GGGCACGCCCTACGAAGGGGGCATCTTCCAAATCGACATCGTTTTGCCTGgtatataatg ... ttttttgcagATGGGTACCCTTTTGAGCCTCCAAGAATGCAATTTGCCACGAAAGTTTG
EST: gi|71856652|gb|DT005707.1|DT005707
EST:     GGGCACGCCCTACGAAGGGGGCATCTTCCAAATCGACATCGTTTTGCCTG                         ATGGGTACCCTTTTGAGCCTCCAAGAATGCAATTTGCCACGAAAGTTTG
genomic: GGGCACGCCCTACGAAGGGGGCATCTTCCAAATCGACATCGTTTTGCCTGgtatataatg ... ttttttgcagATGGGTACCCTTTTGAGCCTCCAAGAATGCAATTTGCCACGAAAGTTTG
EST: gi|110401583|gb|EC968197.1|EC968197
EST:     GGGCACGCCCTACGAAGGGGGCATCTTCCAAATCGACATCGTTTTGCCTG                         ATGGGTACCCTTTTGAGCCTCCAAGAATGCAATTTGCCACGAAAGTTTG
genomic: GGGCACGCCCTACGAAGGGGGCATCTTCCAAATCGACATCGTTTTGCCTGgtatataatg ... ttttttgcagATGGGTACCCTTTTGAGCCTCCAAGAATGCAATTTGCCACGAAAGTTTG
EST: gi|161714263|gb|FC064160.1|FC064160
EST:     GGGCACGCCCTACGAAGGGGGCATCTTCCAAATCGACATCGTTTTGCCTG                         ATGGGTACCCTTTTGAGCCTCCAAGAATGCAATTTGCCACGAAAGTTTG
genomic: GGGCACGCCCTACGAAGGGGGCATCTTCCAAATCGACATCGTTTTGCCTGgtatataatg ... ttttttgcagATGGGTACCCTTTTGAGCCTCCAAGAATGCAATTTGCCACGAAAGTTTG
EST: gi|351028328|gb|FQ427224.1|FQ427224
EST:     GGGCACGCCCTACGAAGGGGGCATCTTCCAAATCGACATCGTTTTGCCTG                         ATGGGTACCCTTTTGAGCCTCCAAGAATGCAATTTGCCACGAAAGTTTG
genomic: GGGCACGCCCTACGAAGGGGGCATCTTCCAAATCGACATCGTTTTGCCTGgtatataatg ... ttttttgcagATGGGTACCCTTTTGAGCCTCCAAGAATGCAATTTGCCACGAAAGTTTG
EST: gi|77581774|gb|DV219842.1|DV219842
EST:     GGGCACGCCCTACGAAGGGGGCATCTTCCAAATCGACATCGTTTTGCCTG                         ATGGGTACCCTTTTGAGCCTCCAAGAATGCAATTTGCCACGAAAGTTTG
genomic: GGGCACGCCCTACGAAGGGGGCATCTTCCAAATCGACATCGTTTTGCCTGgtatataatg ... ttttttgcagATGGGTACCCTTTTGAGCCTCCAAGAATGCAATTTGCCACGAAAGTTTG
EST: gi|77583170|gb|DV220622.1|DV220622
EST:     GGGCACGCCCTACGAAGGGGGCATCTTCCAAATCGACATCGTTTTGCCTG                         ATGGGTACCCTTTTGAGCCTCCAAGAATGCAATTTGCCACGAAAGTTTG
genomic: GGGCACGCCCTACGAAGGGGGCATCTTCCAAATCGACATCGTTTTGCCTGgtatataatg ... ttttttgcagATGGGTACCCTTTTGAGCCTCCAAGAATGCAATTTGCCACGAAAGTTTG
EST: gi|71890757|gb|DT039812.1|DT039812
EST:     GGGCACGCCCTACGAAGGGGGCATCTTCCAAATCGACATCGTTTTGCCTG                         ATGGGTACCCTTTTGAGCCTCCAAGAATGCAATTTGCCACGAAAGTTTG
genomic: GGGCACGCCCTACGAAGGGGGCATCTTCCAAATCGACATCGTTTTGCCTGgtatataatg ... ttttttgcagATGGGTACCCTTTTGAGCCTCCAAGAATGCAATTTGCCACGAAAGTTTG
EST: gi|77588446|gb|DV223434.1|DV223434
EST:     GGGCACGCCCTACGAAGGGGGCATCTTCCAAATCGACATCGTTTTGCCTG                         ATGGGTACCCTTTTGAGCCTCCAAGAATGCAATTTGCCACGAAAGTTTG
genomic: GGGCACGCCCTACGAAGGGGGCATCTTCCAAATCGACATCGTTTTGCCTGgtatataatg ... ttttttgcagATGGGTACCCTTTTGAGCCTCCAAGAATGCAATTTGCCACGAAAGTTTG
EST: gi|161706306|gb|FC057550.1|FC057550
EST:     GGGCACGCCCTACGAAGGGGGCATCTTCCAAATCGACATCGTTTTGCCTG                         ATGGGTACCCTTTTGAGCCTCCAAGAAATGGCAATTTGCCA
genomic: GGGCACGCCCTACGAAGGGGGCATCTTCCAAATCGACATCGTTTTGCCTGgtatataatg ... ttttttgcagATGGGTACCCTTTTGAGCCTCCAAGAA-TG-CAATTTGCCA
EST: gi|110412172|gb|EC977911.1|EC977911
EST:     GGGCACGCCCTACGAAGGGGGCATCTTCCAAATCGACATCGTTTTGCCTG                         ATGGGTACCCTTTTGAGCCTCCAAGAATGCAATTTGCCACGAAAGTTTG
genomic: GGGCACGCCCTACGAAGGGGGCATCTTCCAAATCGACATCGTTTTGCCTGgtatataatg ... ttttttgcagATGGGTACCCTTTTGAGCCTCCAAGAATGCAATTTGCCACGAAAGTTTG