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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGATTTCAGGACTGAACTCTGCCGCTTCAGTGGGGCCAAGATATACCCTGGTAAGGGTATCAGATTTGTTCGGTCTGATTCCCAGgtaaaatgtgatgatattttcaatttggttctgtcaggggcatgtatcattcagagcatatcctacattcaaacgcttccctgtattggcttaattttacttcaattactgtaactgaatagcatctgtttcatttatatcag

Basic information

species Vitis vinifera
transcript Vv16s0100g00650.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0100g00650.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os01g59990.2 (Oryza sativa), 5'ss of exon 3
ATGGATTTCAGGACTGAACTCTGCCGCTTCAGTGGGGCCAAGATATACCCTGGTAAGGGTATCAGATTTGTTCGGTCTGATTCCCAGgtaaaatgtgatgatattttcaatttggttctgtcaggggcatgtatcattcagagcatatcctacattcaaacgcttccctgtattggcttaattttacttcaattactgtaactgaatagcatctgtttcatttatatcag
           ||||||||| ||||| || ||||||   ||||||||||| || ||||||||||| ||  ||||  |||||||||||||||       ||    ||  | ||||     |||      |||  | | | || |  | |  | ||| |||    || |  || ||  |||   |  |                                            
-----------GACTGAACTTTGCCGTTTTAGTGGGCAGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAGgtaaccctctttgtccattgaagtttgaaa--gtccaatctatgattaagttagggggtcttttgcatacaa----tttcaagtgttctctt--ctgcag-------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71867502|gb|DT016557.1|DT016557
EST:     CCAAGATATACCCTGGTAAGGGTATCAGATTTGTTCGGTCTGATTCCCAG                         GTTTTTCTCTTTGCCAATTCTAAATGCAAGAGGTACTTCCACAACCGGCTT
genomic: CCAAGATATACCCTGGTAAGGGTATCAGATTTGTTCGGTCTGATTCCCAGgtaaaatgtg ... tttatatcagGTTTTTCTCTTTGCCAATTCTAAATGCAAGAGGTACTTCCACAACCGGCTT
EST: gi|110394381|gb|EC959247.1|EC959247
EST:     CCAAGATATACCCTGGTAAGGGTATCAGATTTGTTCGGTCTGATTCCCAG                         GTTTTTCTCTTTGCCAATTCTAAATGCAAGAGGTACTTCCACAACCGGCTT
genomic: CCAAGATATACCCTGGTAAGGGTATCAGATTTGTTCGGTCTGATTCCCAGgtaaaatgtg ... tttatatcagGTTTTTCTCTTTGCCAATTCTAAATGCAAGAGGTACTTCCACAACCGGCTT
EST: gi|110389669|gb|EC954526.1|EC954526
EST:     CCAAGATATACCCTGGTAAGGGTATCAGATTTGTTCGGTCTGATTCCCAG                         GTTTTTCTCTTTGCCAATTCTAAATGCAAGAGGTACTTCCACAACCGGCTT
genomic: CCAAGATATACCCTGGTAAGGGTATCAGATTTGTTCGGTCTGATTCCCAGgtaaaatgtg ... tttatatcagGTTTTTCTCTTTGCCAATTCTAAATGCAAGAGGTACTTCCACAACCGGCTT
EST: gi|351021758|gb|FQ437143.1|FQ437143
EST:     CCAAGATATACCCTGGTAAGGGTATCAGATTTGTTCGGTCTGATTCCCAG                         GTTTTTCTCTTTGCCAATTCTAAATGCAAGAGGTACTTCCACAACCGGCTT
genomic: CCAAGATATACCCTGGTAAGGGTATCAGATTTGTTCGGTCTGATTCCCAGgtaaaatgtg ... tttatatcagGTTTTTCTCTTTGCCAATTCTAAATGCAAGAGGTACTTCCACAACCGGCTT
EST: gi|71865895|gb|DT014950.1|DT014950
EST:     CCAAGATATACCCTGGTAAGGGTATCAGATTTGTTCGGTCTGATTCCCAG                         GTTTTTCTCTTTGCCAATTCTAAATGCAAGAGGTACTTCCACAACCGGCTT
genomic: CCAAGATATACCCTGGTAAGGGTATCAGATTTGTTCGGTCTGATTCCCAGgtaaaatgtg ... tttatatcagGTTTTTCTCTTTGCCAATTCTAAATGCAAGAGGTACTTCCACAACCGGCTT
EST: gi|77586726|gb|DV222495.1|DV222495
EST:     CCAAGATATACCCTGGTAAGGGTATCAGATTTGTTCGGTCTGATTCCCAG                         GTTTTTCTCTTTGCCAATTCTAAATGCAAGAGGTACTTCCACAACCGGCTT
genomic: CCAAGATATACCCTGGTAAGGGTATCAGATTTGTTCGGTCTGATTCCCAGgtaaaatgtg ... tttatatcagGTTTTTCTCTTTGCCAATTCTAAATGCAAGAGGTACTTCCACAACCGGCTT
EST: gi|110385691|gb|EC950237.1|EC950237
EST:     CCAAGATATACCCTGGTAAGGGTATCAGATTTGTTCGGTCTGATTCCCAG                         GTTTTTCTCTTTGCCAATTCTAAATGCAAGAGGTACTTCCACAACCGGCTT
genomic: CCAAGATATACCCTGGTAAGGGTATCAGATTTGTTCGGTCTGATTCCCAGgtaaaatgtg ... tttatatcagGTTTTTCTCTTTGCCAATTCTAAATGCAAGAGGTACTTCCACAACCGGCTT
EST: gi|71890456|gb|DT039511.1|DT039511
EST:     CCAAGATATACCCTGGTAAGGGTATCAGATTTGTTCGGTCTGATTCCCAG                         GTTTTTCTCTTTGCCAATTCTAAATGCAAGAGGTACTTCCACAACCGGCTT
genomic: CCAAGATATACCCTGGTAAGGGTATCAGATTTGTTCGGTCTGATTCCCAGgtaaaatgtg ... tttatatcagGTTTTTCTCTTTGCCAATTCTAAATGCAAGAGGTACTTCCACAACCGGCTT