1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AGAATTCTAGGGTTCAAGGCAAGTGTGTGGCGGGGTTTCTTGGGAGGTTCTCGTTTCAGCCTCTGAAGGAGAATCCTCTGTTTGGCCCTTCTTCCAAGACgtgaggagtagttctttgatacccgtctttttgtctttgttggttttattttgggaatttggtaattgggtttgttctggaatggattctgggtgtgttc...
species | Vitis vinifera |
transcript | Vv16s0100g00640.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCGTTTCAGCCTCTGAAGGAGAATCCTCTGTTTGGCCCTTCTTCCAAGAC ATTGGAAAAGTTGGGAGCTCTTGAGTGGAAAAAAGTTGTCAGTAAGCATCAEST: gi|351055680|gb|FQ452145.1|FQ452145
genomic: TCGTTTCAGCCTCTGAAGGAGAATCCTCTGTTTGGCCCTTCTTCCAAGACgtgaggagta ... atttttgaagATTGGAAAAGTTGGGAGCTCTTGAGTGGAAAAAAGTTGTCAGTAAGCATCA
EST: TCGTTTCAGCCTCTGAAGGAGAATCCTCTGTTTGGCCCTTCTTCCAAGAC ATTGGAAAAGTTGGGAGCTCTTGAGTGGAAAAAAGTTGTCAGTAAGCATCAEST: gi|351034814|gb|FQ458171.1|FQ458171
genomic: TCGTTTCAGCCTCTGAAGGAGAATCCTCTGTTTGGCCCTTCTTCCAAGACgtgaggagta ... atttttgaagATTGGAAAAGTTGGGAGCTCTTGAGTGGAAAAAAGTTGTCAGTAAGCATCA
EST: TCGTTTCAGCCTCTGAAGGAGAATCCTCTGTTTGGCCCTTCTTCCAAGAC ATTGGAAAAGTTGGGAGCTCTTGAGTGGAAAAAAGTTGTCAGTAAGCATCAEST: gi|351047313|gb|FQ451825.1|FQ451825
genomic: TCGTTTCAGCCTCTGAAGGAGAATCCTCTGTTTGGCCCTTCTTCCAAGACgtgaggagta ... atttttgaagATTGGAAAAGTTGGGAGCTCTTGAGTGGAAAAAAGTTGTCAGTAAGCATCA
EST: TCGTTTCAGCCTCTGAAGGAGAATCCTCTGTTTGGCCCTTCTTCCAAGAC ATTGGAAAAGTTGGGAGCTCTTGAGTGGAAAAAAGTTGTCAGTAAGCATCAEST: gi|349814964|gb|FQ410187.1|FQ410187
genomic: TCGTTTCAGCCTCTGAAGGAGAATCCTCTGTTTGGCCCTTCTTCCAAGACgtgaggagta ... atttttgaagATTGGAAAAGTTGGGAGCTCTTGAGTGGAAAAAAGTTGTCAGTAAGCATCA
EST: TCGTTTCAGCCTCTGAAGGAGAATCCTCTGTTTGGCCCTTCTTCCAAGAC ATTGGAAAAATTGGGAGCTCTTGAGTGGAAAAAAGTTGTCAGTAAGCATCAEST: gi|161718477|gb|FC065046.1|FC065046
genomic: TCGTTTCAGCCTCTGAAGGAGAATCCTCTGTTTGGCCCTTCTTCCAAGACgtgaggagta ... atttttgaagATTGGAAAAGTTGGGAGCTCTTGAGTGGAAAAAAGTTGTCAGTAAGCATCA
EST: TCGTTTCAGCCTCTGAAGGAGAATCCTCTGTTTGGCCCTTCTTCCAAGAC ATTGGAAAAGTTGGGAGCTCTTGAGTGGAAAAAAGTTGTCAGTAAGCATCAEST: gi|349821089|gb|FQ404342.1|FQ404342
genomic: TCGTTTCAGCCTCTGAAGGAGAATCCTCTGTTTGGCCCTTCTTCCAAGACgtgaggagta ... atttttgaagATTGGAAAAGTTGGGAGCTCTTGAGTGGAAAAAAGTTGTCAGTAAGCATCA
EST: TCGTTTCAGCCTCTGAAGGAGAATCCTCTGTTTGGCCCTTCTTCCAAGAC ATTGGAAAAGTTGGGAGCTCTTGAGTGGAAAAAAGTTGTCAGTAAGCATCAEST: gi|351016253|gb|FQ446113.1|FQ446113
genomic: TCGTTTCAGCCTCTGAAGGAGAATCCTCTGTTTGGCCCTTCTTCCAAGACgtgaggagta ... atttttgaagATTGGAAAAGTTGGGAGCTCTTGAGTGGAAAAAAGTTGTCAGTAAGCATCA
EST: TCGTTTCAGCCTCTGAAGGAGAATCCTCTGTTTGGCCCTTCTTCCAAGAC ATTGGAAAAGTTGGGAGCTCTTGAGTGGAAAAAAGTTGTCAGTAAGCATCAEST: gi|351041883|gb|FQ456093.1|FQ456093
genomic: TCGTTTCAGCCTCTGAAGGAGAATCCTCTGTTTGGCCCTTCTTCCAAGACgtgaggagta ... atttttgaagATTGGAAAAGTTGGGAGCTCTTGAGTGGAAAAAAGTTGTCAGTAAGCATCA
EST: TCGTTTCAGCCTCTGAAGGAGAATCCTCTGTTTGGCCCTTCTTCCAAGAC ATTGGAAAAGTTGGGAGCTCTTGAGTGGAAAAA-GTTGTCAGTAAGCATCAEST: gi|352789912|gb|FQ478727.1|FQ478727
genomic: TCGTTTCAGCCTCTGAAGGAGAATCCTCTGTTTGGCCCTTCTTCCAAGACgtgaggagta ... atttttgaagATTGGAAAAGTTGGGAGCTCTTGAGTGGAAAAAAGTTGTCAGTAAGCATCA
EST: TCGTTTCAGCCTCTGAAGGAGAATCCTCTGTTTGGCCCTTCTTCCAAGAC ATTGGAAAAGTTGGGAGCTCTTGAGTGGAAAAAAGTTGTCAGTAAGCATCAEST: gi|351048431|gb|FQ448705.1|FQ448705
genomic: TCGTTTCAGCCTCTGAAGGAGAATCCTCTGTTTGGCCCTTCTTCCAAGACgtgaggagta ... atttttgaagATTGGAAAAGTTGGGAGCTCTTGAGTGGAAAAAAGTTGTCAGTAAGCATCA
EST: TCGTTTCAGCCTCTGAAGGAGAATCCTCTGTTTGGCCCTTCTTCCAAGAC ATTGGAAAAGTTGGGAGCTCTTGAGTGGAAAAA-GTTGTCAGTAAGCATCAEST: gi|351035144|gb|FQ458501.1|FQ458501
genomic: TCGTTTCAGCCTCTGAAGGAGAATCCTCTGTTTGGCCCTTCTTCCAAGACgtgaggagta ... atttttgaagATTGGAAAAGTTGGGAGCTCTTGAGTGGAAAAAAGTTGTCAGTAAGCATCA
EST: TCGTTTCAGCCTCTGAAGGAGAATCCTCTGTTTGGCCCTTCTTCCAAGAC ATTGGAAAAGTTGGGAGCTCTTGAGTGGAAAAAAGTTGTCAGTAAGCATCAEST: gi|351055425|gb|FQ442023.1|FQ442023
genomic: TCGTTTCAGCCTCTGAAGGAGAATCCTCTGTTTGGCCCTTCTTCCAAGACgtgaggagta ... atttttgaagATTGGAAAAGTTGGGAGCTCTTGAGTGGAAAAAAGTTGTCAGTAAGCATCA
EST: TCGTTTCAGCCTCTGAAGGAGAATCCTCTGTTTGGCCCTTCTTCCAAGAC ATTGGAAAAGTTGGGAGCTCTTGAGTGGAAAAAAGTTGTCAGTAAGCATCA
genomic: TCGTTTCAGCCTCTGAAGGAGAATCCTCTGTTTGGCCCTTCTTCCAAGACgtgaggagta ... atttttgaagATTGGAAAAGTTGGGAGCTCTTGAGTGGAAAAAAGTTGTCAGTAAGCATCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAATTCTAGGGTTCAAGGCAAGTGTGTGGCGGGGTTTCTTGGGAGGTTCTCGTTTCAGCCTCTGAAGGAGAATCCTCTGTTTGGCCCTTCTTCCAAGACgtgaggagtagttctttgatacccgtctttttgtctttgttggttttattttgggaatttggtaattgggtttgttctggaatggattctgggtgtgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA