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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCCAGTCTCCACGATCAACACCACCCGAAAATTCCAGTCAATCTCTGCGTCAAATCAACAGCAACAACTCAACCTCTCTGTTCTTCGTTTCACTCTCGgtgagcatagcacaccttccctttctccctctctctagaatccttctcatttgtgcttttgtggatccag

Basic information

species Vitis vinifera
transcript Vv16s0100g00490.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0100g00490.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA16G32270.3 (Glycine max), 5'ss of exon 1
---CTTCCAGTCTCCACGATCAACACCACCCGAAAATTCCAGTCAATCTCTGCGTCAA-ATCAACAGCAACAACTCAACCTCTCTGTTCTTCGTTTCACTCTCGgtgagcatagcacaccttccctttctccctctctctagaatccttctcatttgtgcttttgtggatccag----------------------------------
   ||  || | |||||| |  |  |  |   || ||||    ||    | ||  ||| | ||||| ||||||||||||||||| |||||||| |||||  | |||     |  | | |||  |  |          |  | ||    ||| | ||   |   ||| | |  |                                   
CCACTAACAAT-TCCACGTTTCAGTCTTC---AAGATTCTCAGCAGCAGCAGCAGCAACAACAACAACAACAACTCAACCTCTCCGTTCTTCGCTTCACATTGGgtc----tctctctcctctctctctcaagagaataaataactaatcttacttaaccaactgtaggtaaatgcatggttaaaataaaatcaattttaatcagttt

upper sequence: Vv16s0100g00490.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT5G52110.2 (Arabidopsis thaliana), 5'ss of exon 1
CTTCCAGTCTCCACGATCAACACCACCCGAAAATTCCAGTCAATCTCTGCG-TCAAATCAAC---AGCAACAACTCAACCTCTCTGTTCTTCGTTTCACTCTCGgtgag------------catagcacaccttccctttctccct----ctctctagaatccttctcatttg---tgcttttgtggatccag
   | |   || ||    | |  | | || | |    |   | ||||  |  |||||   |    | ||||||||||| |||||||||||||| |||||| | |||               ||   || | ||    ||| ||||      | || ||||   ||   | |||   ||  | || |  |  ||
---CAAAGGTCAACACGAATCTTCGCTCGTACAGAG-AACGATTCTCCACAATCAAAGACATCTGATCAACAACTCAATCTCTCTGTTCTTCGCTTCACTTTTGgtattttcttccttccccacttcaaagctcagatttttcccaactattttcgagaaagatttgaaattgatttgtgtctgcgtctgtag