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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAAAAGACCGCTATAAGAATCAGAGAGAGAGAGAGAGGGAGAGTCGTCGAGACTTTACTCTCgtaagattcatctttttcttttttgattccgattgtgaattctgtatttttgatccttggttaaactttatatgaatttttaggtttttcttttccttttttgtttttattctttgttttgcgtgtgttttgtgcag

Basic information

species Vitis vinifera
transcript Vv16s0098g01230.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87586546|gb|DY474780.1|DY474780
EST:     TCGTCGAGACTTTACTCTC                         TGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
genomic: TCGTCGAGACTTTACTCTCgtaagattca ... ttttgtgcagTGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
EST: gi|110358753|gb|EC923202.1|EC923202
EST:     TCGTCGAGACTTTACTCTC                         TGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
genomic: TCGTCGAGACTTTACTCTCgtaagattca ... ttttgtgcagTGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
EST: gi|29782440|gb|CB347747.2|CB347747
EST:     TCGTCGAGACGATCCTCTC                         TGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
genomic: TCGTCGAGACTTTACTCTCgtaagattca ... ttttgtgcagTGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
EST: gi|77587975|gb|DV223193.1|DV223193
EST:     TCGTCGAGACTTTACTCTC                         TGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
genomic: TCGTCGAGACTTTACTCTCgtaagattca ... ttttgtgcagTGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
EST: gi|110717957|gb|EE094270.1|EE094270
EST:     TCGTCGAGACTTTACTCTC                         TGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
genomic: TCGTCGAGACTTTACTCTCgtaagattca ... ttttgtgcagTGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
EST: gi|71870722|gb|DT019777.1|DT019777
EST:     TCGTCGAGACTTTACTCTC                         TGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
genomic: TCGTCGAGACTTTACTCTCgtaagattca ... ttttgtgcagTGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
EST: gi|110689966|gb|EE066652.1|EE066652
EST:     TCGTCGAGACTTTACTGTC                         TGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
genomic: TCGTCGAGACTTTACTCTCgtaagattca ... ttttgtgcagTGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
EST: gi|110367767|gb|EC931718.1|EC931718
EST:     GAGGGAGAGTCGTCGAGACTTTACTCTC                         TGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
genomic: GAGGGAGAGTCGTCGAGACTTTACTCTCgtaagattca ... ttttgtgcagTGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
EST: gi|71881461|gb|DT030516.1|DT030516
EST:     TCGTCGAGACTTTACTCTC                         TGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
genomic: TCGTCGAGACTTTACTCTCgtaagattca ... ttttgtgcagTGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
EST: gi|32267439|gb|CD716402.1|CD716402
EST:     GAGAGAGGGAGAGTCGTCGAGACTTTACTCTC                         TGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
genomic: GAGAGAGGGAGAGTCGTCGAGACTTTACTCTCgtaagattca ... ttttgtgcagTGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
EST: gi|27586308|gb|CB009003.1|CB009003
EST:     GAGACTTTACTCTC                         TGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
genomic: GAGACTTTACTCTCgtaagattca ... ttttgtgcagTGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
EST: gi|30124888|gb|CB910227.1|CB910227
EST:     TCGTCGAGACTTTACTCTC                         TGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
genomic: TCGTCGAGACTTTACTCTCgtaagattca ... ttttgtgcagTGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
EST: gi|26257451|gb|CA808514.1|CA808514
EST:     TCGTCGAGACTTTACTCTC                         TGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
genomic: TCGTCGAGACTTTACTCTCgtaagattca ... ttttgtgcagTGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
EST: gi|110386300|gb|EC950883.1|EC950883
EST:     GAGAGAGGGAGAGTCGTCGAGACTTTACTCTC                         TGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
genomic: GAGAGAGGGAGAGTCGTCGAGACTTTACTCTCgtaagattca ... ttttgtgcagTGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
EST: gi|77584695|gb|DV221422.1|DV221422
EST:     TCGTCGAGACTTTACTCTC                         TGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
genomic: TCGTCGAGACTTTACTCTCgtaagattca ... ttttgtgcagTGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
EST: gi|110389944|gb|EC954819.1|EC954819
EST:     TCGTCGAGACTTTACTCTC                         TGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
genomic: TCGTCGAGACTTTACTCTCgtaagattca ... ttttgtgcagTGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
EST: gi|110399179|gb|EC965672.1|EC965672
EST:     TCGTCGAGACTTTACTCTC                         TGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
genomic: TCGTCGAGACTTTACTCTCgtaagattca ... ttttgtgcagTGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
EST: gi|71877757|gb|DT026812.1|DT026812
EST:     TCGTCGAGACTTTACTCTC                         TGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
genomic: TCGTCGAGACTTTACTCTCgtaagattca ... ttttgtgcagTGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
EST: gi|110399826|gb|EC966356.1|EC966356
EST:     GGAGAGTCGTCGAGACTTTACTCTC                         TGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
genomic: GGAGAGTCGTCGAGACTTTACTCTCgtaagattca ... ttttgtgcagTGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
EST: gi|26267103|gb|CA818166.1|CA818166
EST:     TCGTCGAGACTTTACTCTC                         TGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
genomic: TCGTCGAGACTTTACTCTCgtaagattca ... ttttgtgcagTGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
EST: gi|26258230|gb|CA809293.1|CA809293
EST:     TCGTCGAGACTTTACTTTC                         TGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
genomic: TCGTCGAGACTTTACTCTCgtaagattca ... ttttgtgcagTGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
EST: gi|83276424|gb|DV940432.1|DV940432
EST:     TCGTCCGAGACTTTACTCTC                         TGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
genomic: TCGT-CGAGACTTTACTCTCgtaagattca ... ttttgtgcagTGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
EST: gi|18458899|gb|BM437177.1|BM437177
EST:     TCGTCGAGACTTTACTCTC                         TGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
genomic: TCGTCGAGACTTTACTCTCgtaagattca ... ttttgtgcagTGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
EST: gi|71866886|gb|DT015941.1|DT015941
EST:     TCGTCGAGACTTTACTCTC                         TGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
genomic: TCGTCGAGACTTTACTCTCgtaagattca ... ttttgtgcagTGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
EST: gi|110414524|gb|EC980358.1|EC980358
EST:     TCGTCGAGACTTTACTGTC                         TGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
genomic: TCGTCGAGACTTTACTCTCgtaagattca ... ttttgtgcagTGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
EST: gi|27583746|gb|CB006441.1|CB006441
EST:     AGAGAGGGAGAGTCGTCGAGACTTTACTCTC                         TGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
genomic: AGAGAGGGAGAGTCGTCGAGACTTTACTCTCgtaagattca ... ttttgtgcagTGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
EST: gi|30301030|gb|CB977824.1|CB977824
EST:     TCGTCGAGACTTTACTCTC                         TGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
genomic: TCGTCGAGACTTTACTCTCgtaagattca ... ttttgtgcagTGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
EST: gi|110363128|gb|EC926699.1|EC926699
EST:     CGTCGAGACTTTACTCTC                         TGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
genomic: CGTCGAGACTTTACTCTCgtaagattca ... ttttgtgcagTGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
EST: gi|77586272|gb|DV222235.1|DV222235
EST:     TCGTCGAGACTTTACTCTC                         TGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
genomic: TCGTCGAGACTTTACTCTCgtaagattca ... ttttgtgcagTGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
EST: gi|110387623|gb|EC952306.1|EC952306
EST:     TCGTCGAGACTTTACTCTC                         TGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
genomic: TCGTCGAGACTTTACTCTCgtaagattca ... ttttgtgcagTGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
EST: gi|30130934|gb|CB916273.1|CB916273
EST:     TCGTCGAGACTTTACTCTC                         TGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
genomic: TCGTCGAGACTTTACTCTCgtaagattca ... ttttgtgcagTGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
EST: gi|110392196|gb|EC957443.1|EC957443
EST:     TCGTCGAGACTTTACTCTC                         TGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
genomic: TCGTCGAGACTTTACTCTCgtaagattca ... ttttgtgcagTGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
EST: gi|110383452|gb|EC947825.1|EC947825
EST:     TCGTCGAGACTTTACTCTC                         TGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
genomic: TCGTCGAGACTTTACTCTCgtaagattca ... ttttgtgcagTGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
EST: gi|110406623|gb|EC972203.1|EC972203
EST:     TCGTCGAGACTTTACTGTC                         TGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
genomic: TCGTCGAGACTTTACTCTCgtaagattca ... ttttgtgcagTGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
EST: gi|110721176|gb|EE097878.1|EE097878
EST:     TCGTCGAGACTTTACTCTC                         TGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
genomic: TCGTCGAGACTTTACTCTCgtaagattca ... ttttgtgcagTGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
EST: gi|30130828|gb|CB916167.1|CB916167
EST:     GTCGAGACTTTACTCTC                         TGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
genomic: GTCGAGACTTTACTCTCgtaagattca ... ttttgtgcagTGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
EST: gi|32265178|gb|CD716767.1|CD716767
EST:     TCGTCGAGACTTTACTGTC                         TGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
genomic: TCGTCGAGACTTTACTCTCgtaagattca ... ttttgtgcagTGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
EST: gi|110387093|gb|EC951736.1|EC951736
EST:     TCGTCGAGACTTTACTCTC                         TGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
genomic: TCGTCGAGACTTTACTCTCgtaagattca ... ttttgtgcagTGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
EST: gi|110716510|gb|EE091556.1|EE091556
EST:     TCGTCGAGACTTTACTCTC                         TGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
genomic: TCGTCGAGACTTTACTCTCgtaagattca ... ttttgtgcagTGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
EST: gi|18458694|gb|BM436972.1|BM436972
EST:     TCGTCGAGACTTTACTGTC                         TGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG
genomic: TCGTCGAGACTTTACTCTCgtaagattca ... ttttgtgcagTGAACAGCAGAAGAAATGGCATCAGATCCGAAGATTCACTTGTTCGAAGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACAAAAGACCGCTATAAGAATCAGAGAGAGAGAGAGAGGGAGAGTCGTCGAGACTTTACTCTCgtaagattcatctttttcttttttgattccgattgtgaattctgtatttttgatccttggttaaactttatatgaatttttaggtttttcttttccttttttgtttttattctttgttttgcgtgtgttttgtgcag

- - - - - - - - - - - - - - - -  GAGAGG