Sequence
atgc intronic sequence ATGC exonic sequenceGGTTGGGCGAGGGCACTTTGGACATACTTGTTGGGCTAGGGGCAAAAAAGGTGAGCTCAAAGGTCAAACGGTGGCTGTGAAAATCATCTCCAAAGCTAAGgtgtgtattggtatgtgttttatagtttatatttgcgtttattcaattcatcatgcgaatttcaagctcaatcatatttgatcatgttgatttatactgt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0098g01140.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA06G13920.1 (Glycine max), 5'ss of exon 1
GGTTGGGCGAGGGCACTTTGGACATACTTGTTGGGCTAGGGGCAAAAAAGGTGAGCTCAAAGGTCAAACGGTGGCTGTGAAAATCATCTCCAAAGCTAAGgtg---tgtattggtatgtgtt---ttatagtttatatttgcgtttattcaattcatcatgcgaatttcaagctcaatcatatttgat-catgttgatttatactgt
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AGTGGGTCGAGGGCATTTTGGTCACACGTGTTGGGCCAAGGGGAAGAAGGGTGACCTCAAGGGACAATCTGTTGCTGTTAAAATCATATCCAAAGCTAAGgtgagaggttttgttatgtttttttttgtgattgagaagttcgtgtgatgttttttttttgtttacttggaa---agttggagatggtgtacgttgactcttg----
upper sequence: Vv16s0098g01140.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA04G40920.1 (Glycine max), 5'ss of exon 1
GGTTGGGCGAGGGCACTTTGGACATACTTGTTGGGCTAGGGGCAAAAAAGGTGAGCTCAAAGGTCAAACGGTGGCTGTGAAAATCATCTCCAAAGCTAAGgtg---tgtattggtatgtgttttatagttt-atatttgcgtttattcaattcatcatgcgaatttcaagctcaatcatatttgatcatgttgatttatactgt
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AGTGGGTCGAGGGCATTTTGGTCATACGTGTTGGGCCAAAGGGAAGAAGGGTGACCTCAAGGGACAATCTGTTGCTGTTAAAATCATATCCAAAGCTAAGgtgagaagtcttgttatgttttttttttttttatgattttgctttttta--tgattgtgaagatcgtgtgatgttttttttttttacttggagagttggaga--
upper sequence: Vv16s0098g01140.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT3G49370.1 (Arabidopsis thaliana), 5'ss of exon 1
GGTTGGGCGAGGGCACTTTGGACATACTTGTTGGGCTAGGGGCAAAAAAGGTGAGCTCAAAGGTCAAACGGTGGCTGTGAAAATCATCTCCAAAGCTAAGgtgtgtattggtatg--tgttttatagtttatatttgcgtttattcaattcatcatgcgaatttcaagctcaatcatatttgatcatgttgatttatactgt-
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AGTAGGTCGAGGGCATTTTGGTCATACTTGTTGGGCTAAAGCTAAGAAAGGGAAGATCAAAGGTCAAACAGTTGCAGTCAAAATCATCTCTAAATCTAAGgtttgttacaatgtgattggttccaagattattggaacatagaaatggtt-actgtttcattcgaaagatttgttctttgtgttgatac-aatgtgttttcag
upper sequence: Vv16s0098g01140.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT5G24430.1 (Arabidopsis thaliana), 5'ss of exon 1
GGTTGGGCGAGGGCACTTTGGACATACTTGTTGGGCTAGGGGCAAAAAAGGTGAGCTCAAAGGTCAAACGGTGGCTGTGAAAATCATCTCCAAAGCTAAGgtgtgtattggtatgtgttt---tatagtttatatttgcgtttattcaattcatcatgcgaatttcaagctcaa--tcatatttgatc--atgttgatttatactgt-----------------------------------------------------
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AGTAGGGCGAGGGCATTTTGGTCATACTTGTTGGGCAAAAGCGAAGAAAGGCAAGATGAAGAACCAAACCGTGGCTGTCAAAATCATCTCTAAAGCTAAGgtctgtcttctcttttgtttggtttcagaatgtagggactcttgttttgtt-actattcacaacataatcactatttcagattcagaggaatgtagaatgatatagttaggttctctgtgatcattggttagatgatgaattggaattttgtgtttacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110720801|gb|EE097051.1|EE097051EST: GTGAGCTCAAAGGTCAAACGGTGGCTGTGAAAATCATCTCCAAAGCTAAG ATGACAACAGCAATAGCGATTGAAGATGTTCGTAGGGAGGTGAAAATTTTA
genomic: GTGAGCTCAAAGGTCAAACGGTGGCTGTGAAAATCATCTCCAAAGCTAAGgtgtgtattg ... tatttggcagATGACAACAGCAATAGCGATTGAAGATGTTCGTAGGGAGGTGAAAATTTTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTTGGGCGAGGGCACTTTGGACATACTTGTTGGGCTAGGGGCAAAAAAGGTGAGCTCAAAGGTCAAACGGTGGCTGTGAAAATCATCTCCAAAGCTAAGgtgtgtattggtatgtgttttatagtttatatttgcgtttattcaattcatcatgcgaatttcaagctcaatcatatttgatcatgttgatttatactgt
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