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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCGAATTTTGCAGGGAACTCCGGTTTCCTTTCGCATTCCTCGATCTTCAGGCTGTCTGGTTGTGGCATCGAATGGAAACATTTTAGATTAAGGCGCAGgtgggattgtttcttttctttcttttttgtttttttgttttaattatttttgtctttattttttgatcgtcatttgaccgacccacaatttcatttccgt...

Basic information

species Vitis vinifera
transcript Vv16s0098g01040.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110720783|gb|EE097005.1|EE097005
EST:     AGGCTGTCTGGTTGTGGCATCGAATGGAAACATTTTAGATTAAGGCGCAG                         GGGGGTCGTGTGATTTCGGGGGTTCTGATCATGGCGGTTGTGGAGAATGCT
genomic: AGGCTGTCTGGTTGTGGCATCGAATGGAAACATTTTAGATTAAGGCGCAGgtgggattgt ... ttttttgtagGGGGGTCGTGTGATTTCGGGGGTTCTGATCATGGCGGTTGTGGAGAATGCT
EST: gi|30136879|gb|CB922217.1|CB922217
EST:     AGGCTGTCCGGTTGTGGCATCGAATGGAAACATTTTAGATTAAGGCGCAG                         GGGGGTCGTGTGATTTCGGGGGTTCTGATCATGGCGGTTGTGGAGAATGCT
genomic: AGGCTGTCTGGTTGTGGCATCGAATGGAAACATTTTAGATTAAGGCGCAGgtgggattgt ... ttttttgtagGGGGGTCGTGTGATTTCGGGGGTTCTGATCATGGCGGTTGTGGAGAATGCT
EST: gi|110709689|gb|EE085367.1|EE085367
EST:     AAGCTGTCTGGTTGTGGCATCGAATGGAAACATTTTAGATTAAAGCGCAG                         GGGGGTCGTGTGATTTCGGGGGTTCTGATCATGGCGGTTGTGGAGAATGCT
genomic: AGGCTGTCTGGTTGTGGCATCGAATGGAAACATTTTAGATTAAGGCGCAGgtgggattgt ... ttttttgtagGGGGGTCGTGTGATTTCGGGGGTTCTGATCATGGCGGTTGTGGAGAATGCT
EST: gi|71858945|gb|DT008000.1|DT008000
EST:     AGGCTGTCTGGTTGTGGCATCGAATGGAAACATTTTAGATTAAGGCGCAG                         GGGGGTCGTGTGATTTCGGGGGTTCTGATCATGGCGGTTGTGGAGAATGCT
genomic: AGGCTGTCTGGTTGTGGCATCGAATGGAAACATTTTAGATTAAGGCGCAGgtgggattgt ... ttttttgtagGGGGGTCGTGTGATTTCGGGGGTTCTGATCATGGCGGTTGTGGAGAATGCT
EST: gi|110698581|gb|EE076239.1|EE076239
EST:     AGGCTGTCTGGTTGTGGCATCGAATGGAAACATTTTAGATTAAGGCGCAG                         GGGGGTCGTGTGATTTCGGGGGTTCTGATCATGGCGGTTGTGGAGAATGCT
genomic: AGGCTGTCTGGTTGTGGCATCGAATGGAAACATTTTAGATTAAGGCGCAGgtgggattgt ... ttttttgtagGGGGGTCGTGTGATTTCGGGGGTTCTGATCATGGCGGTTGTGGAGAATGCT
EST: gi|71870167|gb|DT019222.1|DT019222
EST:     AGGCTGTCTGGTTGTGGCATCGAATGGAAACATTTTAGATTAAGGCGCAG                         GGGGGTCGTGTGATTTCGGGGGTTCTGATCATGGCGGTTGTGGAGAATGCT
genomic: AGGCTGTCTGGTTGTGGCATCGAATGGAAACATTTTAGATTAAGGCGCAGgtgggattgt ... ttttttgtagGGGGGTCGTGTGATTTCGGGGGTTCTGATCATGGCGGTTGTGGAGAATGCT
EST: gi|110731191|gb|EE109131.1|EE109131
EST:     AGGCTGTCTGGTTGTGGCATCGAATGGAAACATTTTAAATTAAGGCGCAG                         GGGGGTCGTGTGATTTCGGGGGTTCTGATCATGGCGGTTGTGGAGAATGCT
genomic: AGGCTGTCTGGTTGTGGCATCGAATGGAAACATTTTAGATTAAGGCGCAGgtgggattgt ... ttttttgtagGGGGGTCGTGTGATTTCGGGGGTTCTGATCATGGCGGTTGTGGAGAATGCT
EST: gi|30132916|gb|CB918255.1|CB918255
EST:     AGGCTGTCCGGTTGTGGCATCGAATGGAAACATTTTAGATTAAGGCGCAG                         GGGGGTCGTGTGATTTCGGGGGTTCTGATCATGGCGGTTGTGGAGAATGCT
genomic: AGGCTGTCTGGTTGTGGCATCGAATGGAAACATTTTAGATTAAGGCGCAGgtgggattgt ... ttttttgtagGGGGGTCGTGTGATTTCGGGGGTTCTGATCATGGCGGTTGTGGAGAATGCT