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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCTCGGCCTTCTTTGTGCTCTGCTCCAAAATGTCGATCGGCGAGATAGCTTGCACTTACGCCACTCTCATCCTCCATGATGACGGAATCTCAGTCACAgtaagccaatctctatcgctctttctctcgtttccgatgattacttgttcgattcgttttgttgcggttttgatggatttgtggacttggtcgttgattgatggttag

Basic information

species Vitis vinifera
transcript Vv16s0098g01010.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0098g01010.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: PP1S49_284V6.1 (Physcomitrella patens), 5'ss of exon 1
TCTCTCGGCCTTCTTTGTGCTCTG---CTCCAAAATGTCGATCGGCGAGATAGCTTGCACTTACGCCACTCTCATCCTCCATGATGACGGAATCTCAGTCACAgtaagccaatctctatcgctctttctctcgtttccgatgattacttgttcgattcgttttgttgcggttttgat---ggatttgtggacttggtcgttgattgatggttag
   |   ||  ||  |     | |   | |||  ||||||||| ||||| | || ||||||||||||  |||||||||||| |||||||| ||  |  |||| ||||||  ||  ||     | ||| |    |||    |  ||| || |  | ||  ||  | || |  || | |   | |  | || | | |  | | |  |         
---CCGAGCTCTCCCTCGATCCCGTATCGCCACCATGTCGATCAGCGAGCTTGCCTGCACTTACGCCTGTCTCATCCTCCACGATGACGGCATTGCCATCACTgtaagc--attccttcaagtgttttt---atttttattttttatttctagggttt-ttgggctgggacttcggtccagaagctttgaattagagcatcgggtagga-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71870789|gb|DT019844.1|DT019844
EST:     CTTGCACTTACGCCACTCTCATCCTCCATGATGACGGAATCTCAGTCACA                         CCGGAGAAGATCAATACTTTGGTGAAAGCTGCGAAGGTGGAGGTTGAGTCT
genomic: CTTGCACTTACGCCACTCTCATCCTCCATGATGACGGAATCTCAGTCACAgtaagccaat ... tgatggttagCCGGAGAAGATCAATACTTTGGTGAAAGCTGCGAAGGTGGAGGTTGAGTCT
EST: gi|110399775|gb|EC966301.1|EC966301
EST:     CTTGCACTTACGCCACTCTCATCCTCCATGATGACGGAATCTCAGTCACA                         CCGGAGAAGATCAATACTTTGGTGAAAGCTGCGAAGGTGGAGGTTGAGTCT
genomic: CTTGCACTTACGCCACTCTCATCCTCCATGATGACGGAATCTCAGTCACAgtaagccaat ... tgatggttagCCGGAGAAGATCAATACTTTGGTGAAAGCTGCGAAGGTGGAGGTTGAGTCT
EST: gi|71890652|gb|DT039707.1|DT039707
EST:     CTTGCACTTACGCCACTCTCATCCTCCATGATGACGGAATCTCAGTCACA                         CCGGAGAAGATCAATACTTTGGTGAAAGCTGCGAAGGTGGAGGTTGAGTCT
genomic: CTTGCACTTACGCCACTCTCATCCTCCATGATGACGGAATCTCAGTCACAgtaagccaat ... tgatggttagCCGGAGAAGATCAATACTTTGGTGAAAGCTGCGAAGGTGGAGGTTGAGTCT
EST: gi|110364502|gb|EC927804.1|EC927804
EST:     CTTGCACTTACGCCACTCTCATCCTCCATGATGACGGAATCTCAGTCACA                         CCGGAGAAGATCAATACTTTGGTGAAAGCTGCGAAGGTGGAGGTTGAGTCT
genomic: CTTGCACTTACGCCACTCTCATCCTCCATGATGACGGAATCTCAGTCACAgtaagccaat ... tgatggttagCCGGAGAAGATCAATACTTTGGTGAAAGCTGCGAAGGTGGAGGTTGAGTCT
EST: gi|71870610|gb|DT019665.1|DT019665
EST:     CTTGCACTTACGCCACTCTCATCCTCCATGATGACGGAATCTCAGTCACA                         CCGGAGAAGATCAATACTTTGGTGAAAGCTGCGAAGGTGGAGGTTGAGTCT
genomic: CTTGCACTTACGCCACTCTCATCCTCCATGATGACGGAATCTCAGTCACAgtaagccaat ... tgatggttagCCGGAGAAGATCAATACTTTGGTGAAAGCTGCGAAGGTGGAGGTTGAGTCT
EST: gi|110695957|gb|EE074566.1|EE074566
EST:     CTTGCACTTACGCCACTCTCATCCTTCATGATGACGGAATCTCAGTCACA                         CCGGAGAAGATCAATACTTTGGTGAAAGCTGCGAAGGTGGAGGTTGAGTCT
genomic: CTTGCACTTACGCCACTCTCATCCTCCATGATGACGGAATCTCAGTCACAgtaagccaat ... tgatggttagCCGGAGAAGATCAATACTTTGGTGAAAGCTGCGAAGGTGGAGGTTGAGTCT
EST: gi|110360891|gb|EC924334.1|EC924334
EST:     CTTGCACTTACGCCACTCTCATCCTCCATGATGACGGAATCTCAGTCACA                         CCGGAGAAGATCAATACTTTGGTGAAAGCTGCGAAGGTGGAGGTTGAGTCT
genomic: CTTGCACTTACGCCACTCTCATCCTCCATGATGACGGAATCTCAGTCACAgtaagccaat ... tgatggttagCCGGAGAAGATCAATACTTTGGTGAAAGCTGCGAAGGTGGAGGTTGAGTCT
EST: gi|71875181|gb|DT024236.1|DT024236
EST:     CTTGCACTTACGCCACTCTCATCCTCCATGATGACGGAATCTCAGTCACA                         CCGGAGAAGATCAATACTTTGGTGAAAGCTGCGAAGGTGGAGGTTGAGTCT
genomic: CTTGCACTTACGCCACTCTCATCCTCCATGATGACGGAATCTCAGTCACAgtaagccaat ... tgatggttagCCGGAGAAGATCAATACTTTGGTGAAAGCTGCGAAGGTGGAGGTTGAGTCT
EST: gi|37187433|gb|CF606786.1|CF606786
EST:     CTTGCACTTACGCCACTCTCATCCTCCATGATGACGGAATCTCAGTCACA                         CCGGAGAAGATCAATACTTTGGTGAAAGCTGCAAAGGTGGAGGTTGAGTCT
genomic: CTTGCACTTACGCCACTCTCATCCTCCATGATGACGGAATCTCAGTCACAgtaagccaat ... tgatggttagCCGGAGAAGATCAATACTTTGGTGAAAGCTGCGAAGGTGGAGGTTGAGTCT
EST: gi|110695642|gb|EE073891.1|EE073891
EST:     CTTGCACTTACGCCACTCTCATCCTCCATGATGACGGAATCTCAGTCACA                         CCGGAGAAGATCAATACTTTGGTGAAAGCTGCGAAGGTGGAGGTTGAGTCT
genomic: CTTGCACTTACGCCACTCTCATCCTCCATGATGACGGAATCTCAGTCACAgtaagccaat ... tgatggttagCCGGAGAAGATCAATACTTTGGTGAAAGCTGCGAAGGTGGAGGTTGAGTCT
EST: gi|51989947|gb|CV179402.1|CV179402
EST:     CTTGCACTTACGCCACTCTCATCCTCCATGATGACGGAATCTCAGTCACA                         CCGGAGAAGATCAATACTTTGGTGAAAGCTGCGAAGGTGGAGGTTGAGTCT
genomic: CTTGCACTTACGCCACTCTCATCCTCCATGATGACGGAATCTCAGTCACAgtaagccaat ... tgatggttagCCGGAGAAGATCAATACTTTGGTGAAAGCTGCGAAGGTGGAGGTTGAGTCT
EST: gi|161708387|gb|FC056535.1|FC056535
EST:     CTTGCACTTACGCCACTCTCATCCTCCATGATGACGGAATCTCAGTCACA                         CCGGAGAAGATCAATACTTTGGTGAAAGCTGCGAAGGTGGAGGTTGAGTCT
genomic: CTTGCACTTACGCCACTCTCATCCTCCATGATGACGGAATCTCAGTCACAgtaagccaat ... tgatggttagCCGGAGAAGATCAATACTTTGGTGAAAGCTGCGAAGGTGGAGGTTGAGTCT
EST: gi|30251310|gb|CB969043.1|CB969043
EST:     CTTGCACTTACGCCACTCTCATCCTCCATGATGACGGAATCTCAGTCACA                         CCGGAGAAGATCAATACTTTGGTGAAAGCTGCGAAGGTGGAGGTTGAGTCT
genomic: CTTGCACTTACGCCACTCTCATCCTCCATGATGACGGAATCTCAGTCACAgtaagccaat ... tgatggttagCCGGAGAAGATCAATACTTTGGTGAAAGCTGCGAAGGTGGAGGTTGAGTCT
EST: gi|34416812|gb|CF415566.1|CF415566
EST:     CTTGCACTTACGCCACTCTCATCCTCCATGATGACGGAATCTCAGTCACA                         CCGGAGAAGATCAATACTTTGGTGAAAGCTGCGAAGGTGGAGGTTGAGTCT
genomic: CTTGCACTTACGCCACTCTCATCCTCCATGATGACGGAATCTCAGTCACAgtaagccaat ... tgatggttagCCGGAGAAGATCAATACTTTGGTGAAAGCTGCGAAGGTGGAGGTTGAGTCT
EST: gi|110369437|gb|EC933597.1|EC933597
EST:     CTTGCACTTACGCCACTCTCATCCTCCATGATGACGGAATCTCAGTCACA                         CCGGAGAAGATCAATACTTTGGTGAAAGCTGCGAAGGTGGAGGTTGAGTCT
genomic: CTTGCACTTACGCCACTCTCATCCTCCATGATGACGGAATCTCAGTCACAgtaagccaat ... tgatggttagCCGGAGAAGATCAATACTTTGGTGAAAGCTGCGAAGGTGGAGGTTGAGTCT
EST: gi|71869984|gb|DT019039.1|DT019039
EST:     CTTGCACTTACGCCACTCTCATCCTCCATGATGACGGAATCTCAGTCACA                         CCGGAGAAGATCAATACTTTGGTGAAAGCTGCGAAGGTGGAGGTTGAGTCT
genomic: CTTGCACTTACGCCACTCTCATCCTCCATGATGACGGAATCTCAGTCACAgtaagccaat ... tgatggttagCCGGAGAAGATCAATACTTTGGTGAAAGCTGCGAAGGTGGAGGTTGAGTCT