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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTTTCTTCCCAGAATGGTTCTCAGGGTTTTGTTGGTTGAAGCGGACGATTCCACCAGGCAAATTATCGCTGCGCTTCTCAGGAAATGCAGTTACAAAGgtttgtttatgggttttctttgcttgcttcaggttttgatttgtgtttggtttttgagcattgtttttcaaaatttgaattgggaatttggggtttgggg...

Basic information

species Vitis vinifera
transcript Vv16s0098g00900.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0098g00900.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA04G40640.2 (Glycine max), 5'ss of exon 1
AGGTTTCTTCCCAGAATGGTTCTCAGGGTTTTGTTGGTTGAAGCGGACGATTCCACCAGGCAAATTATCGCTGCGCTTCTCAGGAAATGCAGTTACAAAGgtttgtttatgggttttctttgcttgcttcaggttttgatttgtgtttggtttttgagcattgtttttcaaaatttgaattgggaatttggggtttgggg
| |||  | ||||  |||||| | |||||  ||||||||||||| || |||||||| || |||||||| || ||||||||||| |||||||| |||||||||      |     |||  ||||||  |||   |  |    |  |  |||||||     | |  |||      | |   ||| |||||  || ||  |  
AAGTTCTTGCCCAAGATGGTTTTGAGGGTGCTGTTGGTTGAAGCAGATGATTCCACAAGACAAATTATTGCCGCGCTTCTCAGAAAATGCAGCTACAAAGgtaataccaccttcttttattgcttctttcctttaatttcattaggatggttttgttttagttctttgttccttctattttgtgaattctggcttgtgtt

upper sequence: Vv16s0098g00900.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA06G14150.1 (Glycine max), 5'ss of exon 3
AGGTTTCTTCCCAGAATGGTTCTCAGGGTTTTGTTGGTTGAAGCGGACGATTCCACCAGGCAAATTATCGCTGCGCTTCTCAGGAAATGCAGTTACAAAGgtttgtttatgggttttctttgcttgcttcaggttttgatttgtgtttggtttttgagcattgtttttcaaaatttgaattggga--atttggggtttgggg-
| |||  | ||||  ||| || | |||||  | ||||||||||| || ||||||||||| || ||||| || ||||||||||| |||||||| |||||||||      |     |||  ||||||  |||    ||| ||||      | |  ||  |  ||| || |       |   ||||    | || ||||||| |  
AAGTTCTTGCCCAAGATGATTTTGAGGGTGCTATTGGTTGAAGCAGATGATTCCACCAGACAGATTATTGCCGCGCTTCTCAGAAAATGCAGCTACAAAGgtaacaccaccttcttttattgcttctttc---ctttaatttcatcaggatagttctgttttggttatttgttcgttctttggtgtgaattcgggtttgtgtt

upper sequence: Vv16s0098g00900.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT5G24470.1 (Arabidopsis thaliana), 5'ss of exon 1
AGGTTTCTTCCCAGAATGGTTCTCAGGGTTTTGTTGGTTGAAGCGGACGATTCCACCAGGCAAATTATCGCTGCGCTTCTCAGGAAATGCAGTTACAAAGgtttgtttatgggttttctttgcttgcttcaggttttgatttgtgtttggtttttgagcattgtttttcaaaatttgaattgggaatttggggtttgggg---
|| ||||| || | ||| |  || || |||||| | |||||||| || ||||| || || || ||||||||||| |||||||||||||| ||||||| ||||| |||| ||| ||   |      | || |||||||| ||   || | |  | |||| ||| |   |   | |  ||        ||| |  | ||      
AGATTTCTCCCGAAAATCGCGCTTAGAGTTTTGCTCGTTGAAGCTGATGATTCTACTAGACAGATTATCGCTGCTCTTCTCAGGAAATGTAGTTACAGAGgttagtttctggtttcaatgcttgagatttaggttttgttt---gtatagaatctgagaattatgaattcgattgagatgctaatgttttgaatctgattcgc