1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TTCTTTTCTCTATTTTTCTTGGATAGGGATCTAATTCGGTTTTACCGGATCCGTATTTGAACATGTGTTTTCGGCGTTTGATTAATCAAGTGGTTTGAATgtatgatttcgatccgttttttattaatatattttgtttatttaagtttgtactgttgtttgcttttttgcttttggtttggtagctgagaaaattgaag...
species | Vitis vinifera |
transcript | Vv16s0050g02570.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTGATTCTCGCTCCTGTTATCTCAGATTCGGATCCTCCACTGGTTTGAATCTGAACAAGGTTGTCACAGGTCGGATTCTGCGATCCGATCCGATCACCTTCGGACCTAAAATTCGAAGATTCTGAGEST: gi|351049251|gb|FQ428994.1|FQ428994
genomic: CTGATTCTCGCTCCTGTTATCTCAGATTCGGATCCTCCACTGGTTTGAATCTGAACAAGGTTGTCACAGGTCGGATTCTGCGATCCGATCCGATCACCTTCGGACCTAAAATTCGAAGATTCTGAG
EST: CTGATTCTCGCTCCTGTTATCTCAGATTCGGATCCTCCACTGGTTTGAATCTGAACAAGGTTGTCACAGGTCGGATTCTGCGATCCGATCCGATCACCTTCGGACCTAAAATTCGAAGATTCTGAGEST: gi|351026149|gb|FQ428161.1|FQ428161
genomic: CTGATTCTCGCTCCTGTTATCTCAGATTCGGATCCTCCACTGGTTTGAATCTGAACAAGGTTGTCACAGGTCGGATTCTGCGATCCGATCCGATCACCTTCGGACCTAAAATTCGAAGATTCTGAG
EST: CTGATTCTCGCTCCTGTTATCTCAGATTCGGATCCTCCACTGGTTTGAATCTGAACAAGGTTGTCACAGGTCGGATTCTGCGATCCGATCCGATCACCTTCGGACCTAAAATTCGAAGATTCTGAGEST: gi|351012838|gb|FQ430401.1|FQ430401
genomic: CTGATTCTCGCTCCTGTTATCTCAGATTCGGATCCTCCACTGGTTTGAATCTGAACAAGGTTGTCACAGGTCGGATTCTGCGATCCGATCCGATCACCTTCGGACCTAAAATTCGAAGATTCTGAG
EST: CTGATTCTCGCTCCTGTTATCTCAGATTCGGATCCTCCACTGGTTTGAATCTGAACAAGGTTGTCACAGGTCGGATTCTGCGATCCGATCCGATCACCTTCGGACCTAAAATTCGAAGATTCTGAGEST: gi|351056534|gb|FQ442362.1|FQ442362
genomic: CTGATTCTCGCTCCTGTTATCTCAGATTCGGATCCTCCACTGGTTTGAATCTGAACAAGGTTGTCACAGGTCGGATTCTGCGATCCGATCCGATCACCTTCGGACCTAAAATTCGAAGATTCTGAG
EST: CTGATTCTCGCTCCTGTTATCTCAGATTCGGATCCTCCACTGGTTTGAATCTGAACAAGGTTGTCACAGGTCGGATTCTGCGATCCGATCCGATCACCTTCGGACCTAAAATTCGAAGATTCTGAGEST: gi|351037286|gb|FQ457119.1|FQ457119
genomic: CTGATTCTCGCTCCTGTTATCTCAGATTCGGATCCTCCACTGGTTTGAATCTGAACAAGGTTGTCACAGGTCGGATTCTGCGATCCGATCCGATCACCTTCGGACCTAAAATTCGAAGATTCTGAG
EST: CTGATTCTCGCTCCTGTTATCTCAGATTCGGATCCTCCACTGGTTTGAATCTGAACAAGGTTGTCACAGGTCGGATTCTGCGATCCGATCCGATCACCTTCGGACCTAAAATTCGAAGATTCTGAGEST: gi|161714697|gb|FC064481.1|FC064481
genomic: CTGATTCTCGCTCCTGTTATCTCAGATTCGGATCCTCCACTGGTTTGAATCTGAACAAGGTTGTCACAGGTCGGATTCTGCGATCCGATCCGATCACCTTCGGACCTAAAATTCGAAGATTCTGAG
EST: CTGATTCTCGCTCCTGTTATCTCAGATTCGGATCCTCCACTGGTTTGAATCTGAACAAGGTTGTCACAGGTCGGATTCTGCGATCCGATCCGATCACCTTCGGACCTAAAATTCGAAGATTCTGAGEST: gi|351019611|gb|FQ439428.1|FQ439428
genomic: CTGATTCTCGCTCCTGTTATCTCAGATTCGGATCCTCCACTGGTTTGAATCTGAACAAGGTTGTCACAGGTCGGATTCTGCGATCCGATCCGATCACCTTCGGACCTAAAATTCGAAGATTCTGAG
EST: CTGATTCTCGCTCCTGTTATCTCAGATTCGGATCCTCCACTGGTTTGAATCTGAACAAGGTTGTCACAGGTCGGATTCTGCGATCCGATCCGATCACCTTCGGACCTAAAATTCGAAGATTCTGAGEST: gi|351015894|gb|FQ431849.1|FQ431849
genomic: CTGATTCTCGCTCCTGTTATCTCAGATTCGGATCCTCCACTGGTTTGAATCTGAACAAGGTTGTCACAGGTCGGATTCTGCGATCCGATCCGATCACCTTCGGACCTAAAATTCGAAGATTCTGAG
EST: CTGATTCTCGCTCCTGTTATCTCAGATTCGGATCCTCCACTGGTTTGAATCTGAACAAGGTTGTCACAGGTCGGATTCTGCGATCCGATCCGATCACCTTCGGACCTAAAATTCGAAGATTCTGAGEST: gi|351026397|gb|FQ428409.1|FQ428409
genomic: CTGATTCTCGCTCCTGTTATCTCAGATTCGGATCCTCCACTGGTTTGAATCTGAACAAGGTTGTCACAGGTCGGATTCTGCGATCCGATCCGATCACCTTCGGACCTAAAATTCGAAGATTCTGAG
EST: CTGATTCTCGCTCCTGTTATCTCAGATTCGGATCCTCCACTGGTTTGAATCTGAACAAGGTTGTCACAGGTCGGATTCTGCGATCCGATCCGATCACCTTCGGACCTAAAATTCGAAGATTCTGAGEST: gi|110392544|gb|EC958041.1|EC958041
genomic: CTGATTCTCGCTCCTGTTATCTCAGATTCGGATCCTCCACTGGTTTGAATCTGAACAAGGTTGTCACAGGTCGGATTCTGCGATCCGATCCGATCACCTTCGGACCTAAAATTCGAAGATTCTGAG
EST: CTGATTCTCGCTCCTGTTATCTCAGATTCGGATCCTCCACTGGTTTGAATCTGAACAAGGTTGTCACAGGTCGGATTCTGCGATCCGATCCGATCACCTTCGGACCTAAAATTCGAAGATTCTGAGEST: gi|351028899|gb|FQ434900.1|FQ434900
genomic: CTGATTCTCGCTCCTGTTATCTCAGATTCGGATCCTCCACTGGTTTGAATCTGAACAAGGTTGTCACAGGTCGGATTCTGCGATCCGATCCGATCACCTTCGGACCTAAAATTCGAAGATTCTGAG
EST: CTGATTCTCGCTCCTGTTATCTCAGATTCGGATCCTCCACTGGTTTGAATCTGAACAAGGTTGTCACAGGTCGGATTCTGCGATCCGATCCGATCACCTTCGGACCTAAAATTCGAAGATTCTGAGEST: gi|351042859|gb|FQ451153.1|FQ451153
genomic: CTGATTCTCGCTCCTGTTATCTCAGATTCGGATCCTCCACTGGTTTGAATCTGAACAAGGTTGTCACAGGTCGGATTCTGCGATCCGATCCGATCACCTTCGGACCTAAAATTCGAAGATTCTGAG
EST: CTGATTCTCGCTCCTGTTATCTCAGATTCGGATCCTCCACTGGTTTGAATCTGAACAAGGTTGTCACAGGTCGGATTCTGCGATCCGATCCGATCACCTTCGGACCTAAAATTCGAAGATTCTGAGEST: gi|351023854|gb|FQ423277.1|FQ423277
genomic: CTGATTCTCGCTCCTGTTATCTCAGATTCGGATCCTCCACTGGTTTGAATCTGAACAAGGTTGTCACAGGTCGGATTCTGCGATCCGATCCGATCACCTTCGGACCTAAAATTCGAAGATTCTGAG
EST: CTGATTCTCGCTCCTGTTATCTCAGATTCGGATCCTCCACTGGTTTGAATCTGAACAAGGTTGTCACAGGTCGGATTCTGCGATCCGATCCGATCACCTTCGGACCTAAAATTCGAAGATTCTGAG
genomic: CTGATTCTCGCTCCTGTTATCTCAGATTCGGATCCTCCACTGGTTTGAATCTGAACAAGGTTGTCACAGGTCGGATTCTGCGATCCGATCCGATCACCTTCGGACCTAAAATTCGAAGATTCTGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCTTTTCTCTATTTTTCTTGGATAGGGATCTAATTCGGTTTTACCGGATCCGTATTTGAACATGTGTTTTCGGCGTTTGATTAATCAAGTGGTTTGAATgtatgatttcgatccgttttttattaatatattttgtttatttaagtttgtactgttgtttgcttttttgcttttggtttggtagctgagaaaattgaag
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