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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCGTTGACCTGTACACTCAGGCCATCGAAATAAACCCTAATCATGCCGAGCTCTATGTTGAACGATCTCAGGCCAACATCAAACTCAACAACTTCACTGgtatcgatcaatcactcttctgtttggctttccagaaagtccgggatatttaattttgcgtttcgtgttgttgtgttggtattggctttgattgatttta...

Basic information

species Vitis vinifera
transcript Vv16s0050g01510.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0050g01510.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA16G29450.2 (Glycine max), 5'ss of exon 1
GCCGTTGACCTGTACACTCAGGCCATCGAAATAAACCCTAATCATGCCGAGCTCTATGTTGAACGATCTCAGGCCAACATCAAACTCAACAACTTCACTGgtat-cgatcaatcactcttctgtttggctttccagaaagtccgggatatttaattttgcgtttcgtgttgttgtgttggtattggctttgattgatttta-
||||| |||||     ||||||||||  |  |  | || ||  | ||||| ||||| |  || ||| | || |||||||||||||||||||||||||||||||  | |||  || |||   ||       ||   |    |   | |||     ||    |||  || |         ||| |||  |  ||  || | |  
GCCGTGGACCTTCTTTCTCAGGCCATTCACCTCGAACCCAACAAAGCCGAACTCTACGCCGACCGAGCCCAAGCCAACATCAAACTCAACAACTTCACTGgtacaccatctctccctcccttgaaaaaagttt--gtgtttttcgaatacccttttgcctgttctgtataaagcatcgggttttgcttgcgacggaatctgt

upper sequence: Vv16s0050g01510.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA09G23980.1 (Glycine max), 5'ss of exon 1
GCCGTTGACCTGTACACTCAGGCCATCGAAATAAACCCTAATCATGCCGAGCTCTATGTTGAACGATCTCAGGCCAACATCAAACTCAACAACTTCACTGgtat-cgatcaatcactcttctgtttggctttccagaaagtccgggatatttaattttgcgtttcgtgttg-ttgtgttggtattggctttgattgatttta--
||||| |||||   | ||||||||||  |  |  | || ||  | |||||  |||| |  || ||  | || |||||||||||||||||||||||||||||||  |  |||  | |||   ||    | |||        |     |||     ||    |||  || |   |  |   ||| |||  |  ||  || | |   
GCCGTGGACCTTCTCTCTCAGGCCATTCATCTCGAACCCAACAAAGCCGAATTCTACGCCGACCGCGCCCAAGCCAACATCAAACTCAACAACTTCACTGgtacaccctcacgccctcccttgaaaagttttt----gtttttctaatacccttttggctgttctgtatgaatcattggggttttgcttgcgacggaatctgtg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110712988|gb|EE088514.1|EE088514
EST:     GCTCTATGTTGAACGATCTCAGGCCAACATCAAACTCAACAACTTCACTG                         AGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCTA
genomic: GCTCTATGTTGAACGATCTCAGGCCAACATCAAACTCAACAACTTCACTGgtatcgatca ... ttttgagcagAGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCTA
EST: gi|71859342|gb|DT008397.1|DT008397
EST:     CCAACATCAAACTCAACAACTTCACTG                         AGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCTA
genomic: CCAACATCAAACTCAACAACTTCACTGgtatcgatca ... ttttgagcagAGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCTA
EST: gi|161710647|gb|FC059030.1|FC059030
EST:     GCTCTATGTTGAACGATCTCAGGCCAACATCAAACTCAACAACTTCACTG                         AGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCTA
genomic: GCTCTATGTTGAACGATCTCAGGCCAACATCAAACTCAACAACTTCACTGgtatcgatca ... ttttgagcagAGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCTA
EST: gi|110733197|gb|EE109180.1|EE109180
EST:     GCTCTATGTTGAACGATCTCAGGCCAACATCAAACTCAACAACTTCACTG                         AGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCTA
genomic: GCTCTATGTTGAACGATCTCAGGCCAACATCAAACTCAACAACTTCACTGgtatcgatca ... ttttgagcagAGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCTA
EST: gi|29782866|gb|CB348559.2|CB348559
EST:     GCTCTATGTTGAACGATCTCAGGCCAACATCAAACTCAACAACTTCACTG                         AGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCTA
genomic: GCTCTATGTTGAACGATCTCAGGCCAACATCAAACTCAACAACTTCACTGgtatcgatca ... ttttgagcagAGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCTA
EST: gi|29783203|gb|CB349232.2|CB349232
EST:     GCTCTATGTTGAACGATCTCAGGCCAACATCAAACTCAACAACTTCACTG                         AGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCTA
genomic: GCTCTATGTTGAACGATCTCAGGCCAACATCAAACTCAACAACTTCACTGgtatcgatca ... ttttgagcagAGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCTA
EST: gi|110694395|gb|EE071465.1|EE071465
EST:     GCTCTATGTTGAACGATCTCAGGCCAACATCAAACTCAACAACTTCACTG                         AGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCTA
genomic: GCTCTATGTTGAACGATCTCAGGCCAACATCAAACTCAACAACTTCACTGgtatcgatca ... ttttgagcagAGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCTA
EST: gi|161712354|gb|FC061928.1|FC061928
EST:     GCTCTATGTTGAACGATCTCAGGCCAACATCAAACTCAACAACTTCACTG                         AGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCTA
genomic: GCTCTATGTTGAACGATCTCAGGCCAACATCAAACTCAACAACTTCACTGgtatcgatca ... ttttgagcagAGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCTA
EST: gi|110686508|gb|EE064228.1|EE064228
EST:     GCTCTATGTTGAACGATCTCAGGCCAACATCAAACTCAACAACTTCACTG                         AGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCTA
genomic: GCTCTATGTTGAACGATCTCAGGCCAACATCAAACTCAACAACTTCACTGgtatcgatca ... ttttgagcagAGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCTA
EST: gi|37187277|gb|CF606630.1|CF606630
EST:     GCTCTATGTTGAACGATCTCAGGCCAACATCAAACTCAACAACTTCACTG                         AGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCTA
genomic: GCTCTATGTTGAACGATCTCAGGCCAACATCAAACTCAACAACTTCACTGgtatcgatca ... ttttgagcagAGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCTA
EST: gi|46917631|gb|CN546960.1|CN546960
EST:     CGATCTCAGGCCAACATCAAACTCAACAACTTCACTG                         AGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCTA
genomic: CGATCTCAGGCCAACATCAAACTCAACAACTTCACTGgtatcgatca ... ttttgagcagAGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCTA
EST: gi|294964470|gb|GW838273.1|GW838273
EST:     GCTCTATGTTGAACGATCTCAGGCCAACATCAAACTCAACAACTGCACTG                         AGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCTA
genomic: GCTCTATGTTGAACGATCTCAGGCCAACATCAAACTCAACAACTTCACTGgtatcgatca ... ttttgagcagAGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCTA
EST: gi|110729024|gb|EE105164.1|EE105164
EST:     GCTCTATGTTGAACGATCTCAGGCCAACATCAAACTCAACAACTTCACTG                         AGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCTA
genomic: GCTCTATGTTGAACGATCTCAGGCCAACATCAAACTCAACAACTTCACTGgtatcgatca ... ttttgagcagAGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCTA
EST: gi|28969441|gb|CB348474.1|CB348474
EST:     GCTCTATGTTGAACGATCTCAGGCCAACATCAAACTCAACAACTTCACTG                         AGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCTA
genomic: GCTCTATGTTGAACGATCTCAGGCCAACATCAAACTCAACAACTTCACTGgtatcgatca ... ttttgagcagAGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCTA
EST: gi|71863962|gb|DT013017.1|DT013017
EST:     GCTCTATGTTGAACGATCTCAGGCCAACATCAAACTCAACAACTTCACTG                         AGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCTA
genomic: GCTCTATGTTGAACGATCTCAGGCCAACATCAAACTCAACAACTTCACTGgtatcgatca ... ttttgagcagAGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCTA
EST: gi|71859797|gb|DT008852.1|DT008852
EST:     GCTCTATGTTGAACGATCTCAGGCCAACATCAAACTCAACAACTTCACTG                         AGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCTA
genomic: GCTCTATGTTGAACGATCTCAGGCCAACATCAAACTCAACAACTTCACTGgtatcgatca ... ttttgagcagAGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCTA
EST: gi|161707617|gb|FC057397.1|FC057397
EST:     GCTCTATGTTGAACGATCTCAGGCCAACATCAAACTCAACAACTTCACTG                         AGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCTA
genomic: GCTCTATGTTGAACGATCTCAGGCCAACATCAAACTCAACAACTTCACTGgtatcgatca ... ttttgagcagAGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCTA
EST: gi|110687406|gb|EE064790.1|EE064790
EST:     GCTCTATGTTGAACGATCTCAGGCCAACATCAAACTCAACAACTTCACTG                         AGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCTA
genomic: GCTCTATGTTGAACGATCTCAGGCCAACATCAAACTCAACAACTTCACTGgtatcgatca ... ttttgagcagAGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCTA
EST: gi|110693950|gb|EE070628.1|EE070628
EST:     GCTCTATGTTGAACGATCTCAGGCCAACATCAAACTCAACAACTTCACTG                         AGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCTA
genomic: GCTCTATGTTGAACGATCTCAGGCCAACATCAAACTCAACAACTTCACTGgtatcgatca ... ttttgagcagAGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCTA
EST: gi|110711614|gb|EE088295.1|EE088295
EST:     GCTCTATGTTGAACGATCTCAGGCCAACATCAAACTCAACAACTTCACTG                         AGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCTA
genomic: GCTCTATGTTGAACGATCTCAGGCCAACATCAAACTCAACAACTTCACTGgtatcgatca ... ttttgagcagAGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCTA
EST: gi|161711760|gb|FC058309.1|FC058309
EST:     GCTCTATGTTGAACGATCTCAGGCCAACATCAAACTCAACAACTTCACTG                         AGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCTA
genomic: GCTCTATGTTGAACGATCTCAGGCCAACATCAAACTCAACAACTTCACTGgtatcgatca ... ttttgagcagAGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCTA
EST: gi|110732977|gb|EE108734.1|EE108734
EST:     GCTCTATGTTGAACGATCTCAGGCCAACATCAAACTCAACAACTTCACTG                         AGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCTA
genomic: GCTCTATGTTGAACGATCTCAGGCCAACATCAAACTCAACAACTTCACTGgtatcgatca ... ttttgagcagAGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCTA
EST: gi|161708929|gb|FC060472.1|FC060472
EST:     GCTCTATGTTGAACGATCTCAGGCCAACATCAAACTCAACAACTTCACTG                         AGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCT
genomic: GCTCTATGTTGAACGATCTCAGGCCAACATCAAACTCAACAACTTCACTGgtatcgatca ... ttttgagcagAGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCT
EST: gi|110723197|gb|EE100235.1|EE100235
EST:     GCTCTATGTTGAACGATCTCAGGCCAACATCAAACTCAACAACTTCACTG                         AGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCTA
genomic: GCTCTATGTTGAACGATCTCAGGCCAACATCAAACTCAACAACTTCACTGgtatcgatca ... ttttgagcagAGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCTA
EST: gi|161718657|gb|FC067946.1|FC067946
EST:     GCTCTATGTTGAACGATCTCAGGCCAACATCAAACTCAACAACTTCACTG                         AGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCTA
genomic: GCTCTATGTTGAACGATCTCAGGCCAACATCAAACTCAACAACTTCACTGgtatcgatca ... ttttgagcagAGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCTA
EST: gi|71857115|gb|DT006170.1|DT006170
EST:     GCTCTATGTTGAACGATCTCAGGCCAACATCAAACTCAACAACTTCACTG                         AGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCTA
genomic: GCTCTATGTTGAACGATCTCAGGCCAACATCAAACTCAACAACTTCACTGgtatcgatca ... ttttgagcagAGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCTA
EST: gi|71873209|gb|DT022264.1|DT022264
EST:     GCTCTATGTTGAACGATCTCAGGCCAACATCAAACTCAACAACTTCACTG                         AGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCTA
genomic: GCTCTATGTTGAACGATCTCAGGCCAACATCAAACTCAACAACTTCACTGgtatcgatca ... ttttgagcagAGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCTA