Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGAGACGAGCGAACACAGGAAAATACCCACTCTCTTACACTGACCCACAACAATTCCTTTCCCTGTGAGCATCGTCCACGACCCTCAGAAACCAGGCGGgtaagtttggttctcaggaaatcgggagaaaaggaaagaaaaattttaggaatcctaataggtttttccagctcacattttgcttatctcgtacaccttctcag

Basic information

species Vitis vinifera
transcript Vv16s0050g01450.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351046546|gb|FQ453162.1|FQ453162
EST:     ACAATTCCTTTCCCTGTGAGCATCGTCCACGACCCTCAGAAACCAGGCGG                         GATGCTCTGTTTGCGATACTCGCCGGCTACCATTACTAGAAGATTGGACTC
genomic: ACAATTCCTTTCCCTGTGAGCATCGTCCACGACCCTCAGAAACCAGGCGGgtaagtttgg ... accttctcagGATGCTCTGTTTGCGATACTCTCCGGCTACCATTACTAGAAGATTGGACGC
EST: gi|351054436|gb|FQ450519.1|FQ450519
EST:     ACAATTCCTTTCCCTGTGAGCATCGTCCACGACCCTCAGAAACCAGGCGG                         GATGCTCTGTTTGCGATACTCTCCGGCTACCATTACTAGAAGATTGGACGC
genomic: ACAATTCCTTTCCCTGTGAGCATCGTCCACGACCCTCAGAAACCAGGCGGgtaagtttgg ... accttctcagGATGCTCTGTTTGCGATACTCTCCGGCTACCATTACTAGAAGATTGGACGC
EST: gi|351033744|gb|FQ462274.1|FQ462274
EST:     ACAATTCCTTTCCCTGTGAGCATCGTCCACGACCCTCAGAAACCAGGCGG                         GATGCTCTGTTTGCGATACTCGCCGGCTACCATTACTAGAAGATTGGACTC
genomic: ACAATTCCTTTCCCTGTGAGCATCGTCCACGACCCTCAGAAACCAGGCGGgtaagtttgg ... accttctcagGATGCTCTGTTTGCGATACTCTCCGGCTACCATTACTAGAAGATTGGACGC
EST: gi|349822100|gb|FQ408429.1|FQ408429
EST:     ACAACTCCTTTCCCTGTGAGCATCGTCCACGACCCTCAGAAACCAGGCGG                         GATGCTCTGTTTGCGATACTCTCCGGCTACCATTACTAGAAGATTGGACGC
genomic: ACAATTCCTTTCCCTGTGAGCATCGTCCACGACCCTCAGAAACCAGGCGGgtaagtttgg ... accttctcagGATGCTCTGTTTGCGATACTCTCCGGCTACCATTACTAGAAGATTGGACGC
EST: gi|349814396|gb|FQ398836.1|FQ398836
EST:     ACAATTCCTTTCCCTGTGAGCATCGTCCACGACCCTCAGAAACCAGGCGG                         GATGCTCTGTTTGCGATACTCTCCGGCTACCATTACTAGAAGATTGGACGC
genomic: ACAATTCCTTTCCCTGTGAGCATCGTCCACGACCCTCAGAAACCAGGCGGgtaagtttgg ... accttctcagGATGCTCTGTTTGCGATACTCTCCGGCTACCATTACTAGAAGATTGGACGC
EST: gi|349815708|gb|FQ400864.1|FQ400864
EST:     ACAATTCCTTTCCCTGTGAGCATCGTCCACGACCCTCAGAAACCAGGCGG                         GATGCTCTGTTTGCGATACTCGCCGGCTACCATTACTAGAAGATTGGACTC
genomic: ACAATTCCTTTCCCTGTGAGCATCGTCCACGACCCTCAGAAACCAGGCGGgtaagtttgg ... accttctcagGATGCTCTGTTTGCGATACTCTCCGGCTACCATTACTAGAAGATTGGACGC
EST: gi|351055367|gb|FQ441965.1|FQ441965
EST:     ACAATTCCTTTCCCTGTGAGCATCGTCCACGACCCTCAGAAACCAGGCGG                         GATGCTCTGTTTGCGATACTCGCCGGCTACCATTACTAGAAGATTGGACTC
genomic: ACAATTCCTTTCCCTGTGAGCATCGTCCACGACCCTCAGAAACCAGGCGGgtaagtttgg ... accttctcagGATGCTCTGTTTGCGATACTCTCCGGCTACCATTACTAGAAGATTGGACGC
EST: gi|349827078|gb|FQ421351.1|FQ421351
EST:     ACAATTCCTTTCCCTGTGAGCATCGTCCACGACCCTCAGAAACCAGGCGG                         GATGCTCTGTTTGCGATACTCTCCGGCTACCATTACTAGAAGATTGGACGC
genomic: ACAATTCCTTTCCCTGTGAGCATCGTCCACGACCCTCAGAAACCAGGCGGgtaagtttgg ... accttctcagGATGCTCTGTTTGCGATACTCTCCGGCTACCATTACTAGAAGATTGGACGC
EST: gi|294965603|gb|GW837202.1|GW837202
EST:     ACAATTCCTTTCCCTGTGAGCATCGTCCACGACCCTCAGAAACCAGGCGG                         GATGCTCTGTTTGCGATACTCGCCGGCTACCATTACTAGAAGATTGGACTC
genomic: ACAATTCCTTTCCCTGTGAGCATCGTCCACGACCCTCAGAAACCAGGCGGgtaagtttgg ... accttctcagGATGCTCTGTTTGCGATACTCTCCGGCTACCATTACTAGAAGATTGGACGC
EST: gi|351052433|gb|FQ452466.1|FQ452466
EST:     ACAATTCCTTTCCCTGTGAGCATCGTCCACGACCCTCAGAAACCAGGCGG                         GATGCTCTGTTTGCGATACTCGCCGGCTACCATTACTAGAAGATTGGACTC
genomic: ACAATTCCTTTCCCTGTGAGCATCGTCCACGACCCTCAGAAACCAGGCGGgtaagtttgg ... accttctcagGATGCTCTGTTTGCGATACTCTCCGGCTACCATTACTAGAAGATTGGACGC
EST: gi|352781628|gb|FQ468926.1|FQ468926
EST:     ACAATTCCTTTCCCTGTGAGCATCGTCCACGACCCTCAGAAACCAGGCGG                         GATGCTCTGTTTGCGATACTCTCCGGCTACCATTACTAGAAGATTGGACGC
genomic: ACAATTCCTTTCCCTGTGAGCATCGTCCACGACCCTCAGAAACCAGGCGGgtaagtttgg ... accttctcagGATGCTCTGTTTGCGATACTCTCCGGCTACCATTACTAGAAGATTGGACGC