1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGGATCCGGCTAAGAAGATCCGGAAGCCCTACACTATTACCAAGTGCAGAGAGAAGTGGACCGAGCCCGAGCACGACAAGTTCCTCGAAGCTCTTCAGCTgtaagacgcttcaactcgaatagggttttggttggggcattttttttatgtgtttgattgcgtgtttatttttttgtttatctctttgtgttgagaattt...
species | Vitis vinifera |
transcript | Vv16s0050g01180.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAGAAGTGGACCGAGCCCGAGCACGACAAGTTCCTCGAAGCTCTTCAGCT TTTTGACCGTGATTGGAAAAAGATTGAGGCATTTGTTGGATCAAAGACAGTEST: gi|351022507|gb|FQ447029.1|FQ447029
genomic: GAGAAGTGGACCGAGCCCGAGCACGACAAGTTCCTCGAAGCTCTTCAGCTgtaagacgct ... ttctactcagTTTTGACCGTGATTGGAAAAAGATTGAGGCATTTGTTGGATCAAAGACAGT
EST: GAGAAGTGGACCGAGCCCGAGCACGACAAGTTCCTCGAAGCTCTTCAGCT TTTTGACCGTGATTGGAAAAAGATTGAGGCATTTGTTGGATCAAAGACAGTEST: gi|349832942|gb|FQ423064.1|FQ423064
genomic: GAGAAGTGGACCGAGCCCGAGCACGACAAGTTCCTCGAAGCTCTTCAGCTgtaagacgct ... ttctactcagTTTTGACCGTGATTGGAAAAAGATTGAGGCATTTGTTGGATCAAAGACAGT
EST: GAGAAGTGGACCGAGCCCGAGCACGACAAGTTCCTCGAAGCTCTTCAGCT TTTTGACCGTGATTGGAAAAAGATTGAGGCATTTGTTGGATCAAAGACAGTEST: gi|351013330|gb|FQ425035.1|FQ425035
genomic: GAGAAGTGGACCGAGCCCGAGCACGACAAGTTCCTCGAAGCTCTTCAGCTgtaagacgct ... ttctactcagTTTTGACCGTGATTGGAAAAAGATTGAGGCATTTGTTGGATCAAAGACAGT
EST: GAGAAGTGGACCGAGCCCGAGCACGACAAGTTCCTCGAAGCTCTTCAGCT TTTTGACCGTGATTGGAAAAAGATTGAGGCATTTGTTGGATCAAAGACAGT
genomic: GAGAAGTGGACCGAGCCCGAGCACGACAAGTTCCTCGAAGCTCTTCAGCTgtaagacgct ... ttctactcagTTTTGACCGTGATTGGAAAAAGATTGAGGCATTTGTTGGATCAAAGACAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGATCCGGCTAAGAAGATCCGGAAGCCCTACACTATTACCAAGTGCAGAGAGAAGTGGACCGAGCCCGAGCACGACAAGTTCCTCGAAGCTCTTCAGCTgtaagacgcttcaactcgaatagggttttggttggggcattttttttatgtgtttgattgcgtgtttatttttttgtttatctctttgtgttgagaattt
- - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaataggg