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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACTGCAACTGCGAGCGAAGCCCTAGCCCTTGCCCTTGCGTGCCTTCTCTCTCGCAACTTCACCGCAGCCATGgcgagtcttcctcagcatttcgcactttttctctttgcaaatctgtgtttctgtgaagtaactgttttgttaattccattgtgcag

Basic information

species Vitis vinifera
transcript Vv16s0050g01160.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51051467|gb|CO819071.1|CO819071
EST:     CACCGCAG-CATG                         A-TAT-CCCGAG-AGAATCGGAGAGAGAT-TCCAAGTACCTC-TCCAAG
genomic: CACCGCAGCCATGgcgagtcttc ... cattgtgcagATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG
EST: gi|110377465|gb|EC942530.1|EC942530
EST:     TAGCCCTTGCCCTTGCGTGCCTTCTCTCTCGCAACTTCACCGCAGCCATG                         ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG
genomic: TAGCCCTTGCCCTTGCGTGCCTTCTCTCTCGCAACTTCACCGCAGCCATGgcgagtcttc ... cattgtgcagATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG
EST: gi|110715571|gb|EE093772.1|EE093772
EST:     CTCTCTCGCAACTTCACCGCAGCCATG                         ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG
genomic: CTCTCTCGCAACTTCACCGCAGCCATGgcgagtcttc ... cattgtgcagATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG
EST: gi|110700496|gb|EE078604.1|EE078604
EST:     TAGCCCTTGCCCTTGCGTGCCTTCTCTCTCGCAACTTCACCGCAGCCATG                         ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG
genomic: TAGCCCTTGCCCTTGCGTGCCTTCTCTCTCGCAACTTCACCGCAGCCATGgcgagtcttc ... cattgtgcagATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG
EST: gi|71868077|gb|DT017132.1|DT017132
EST:     TAGCCCTTGCCCTTGCGTGCCTTCTCTCTCGCAACTTCACCGCAGCCATG                         ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG
genomic: TAGCCCTTGCCCTTGCGTGCCTTCTCTCTCGCAACTTCACCGCAGCCATGgcgagtcttc ... cattgtgcagATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG
EST: gi|110702044|gb|EE080304.1|EE080304
EST:     CGTGCCTTCTCTCTCGCAACTTCACCGCAGCCATG                         ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG
genomic: CGTGCCTTCTCTCTCGCAACTTCACCGCAGCCATGgcgagtcttc ... cattgtgcagATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG
EST: gi|110703760|gb|EE080890.1|EE080890
EST:     TAGCCCTTGCCCTTGCGTGCCTTCTCTCTCGCAACTTCACCGCAGCCATG                         ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG
genomic: TAGCCCTTGCCCTTGCGTGCCTTCTCTCTCGCAACTTCACCGCAGCCATGgcgagtcttc ... cattgtgcagATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG
EST: gi|110398785|gb|EC965259.1|EC965259
EST:     TAGCCCTTGCCCTTGCGTGCCTTCTCTCTCGCAACTTCACCGCAGCCATG                         ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG
genomic: TAGCCCTTGCCCTTGCGTGCCTTCTCTCTCGCAACTTCACCGCAGCCATGgcgagtcttc ... cattgtgcagATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG
EST: gi|110360451|gb|EC923562.1|EC923562
EST:     CAACTTCACCGCAGCCATG                         ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG
genomic: CAACTTCACCGCAGCCATGgcgagtcttc ... cattgtgcagATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG
EST: gi|110692204|gb|EE071178.1|EE071178
EST:     AGCCCTTGCCCTTGCGTGCCTTCTCTCTCGCAACTTCACCGCAGCCATG                         ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG
genomic: AGCCCTTGCCCTTGCGTGCCTTCTCTCTCGCAACTTCACCGCAGCCATGgcgagtcttc ... cattgtgcagATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG
EST: gi|110723368|gb|EE100598.1|EE100598
EST:     TAGCCCTTGCCCTTGCGTGCCTTCTCTCTCGCAACTTCACCGCAGCCATG                         ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG
genomic: TAGCCCTTGCCCTTGCGTGCCTTCTCTCTCGCAACTTCACCGCAGCCATGgcgagtcttc ... cattgtgcagATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG
EST: gi|87584250|gb|DY473484.1|DY473484
EST:     CTCGCAACTTCACCGCAGCCATG                         ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG
genomic: CTCGCAACTTCACCGCAGCCATGgcgagtcttc ... cattgtgcagATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG
EST: gi|30320459|gb|CD003721.1|CD003721
EST:     CTCGCAACTTCACCGCAGCCATG                         ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG
genomic: CTCGCAACTTCACCGCAGCCATGgcgagtcttc ... cattgtgcagATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG
EST: gi|29781884|gb|CB346698.2|CB346698
EST:     TAGCCCTTGCCCTTGCGTGCCTTCTCTCTCGCAACTTCACCGCAGCCATG                         ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG
genomic: TAGCCCTTGCCCTTGCGTGCCTTCTCTCTCGCAACTTCACCGCAGCCATGgcgagtcttc ... cattgtgcagATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG
EST: gi|18458561|gb|BM436839.1|BM436839
EST:     CTCGCAACTTCACCGCAGCCATG                         ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG
genomic: CTCGCAACTTCACCGCAGCCATGgcgagtcttc ... cattgtgcagATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG
EST: gi|110722253|gb|EE098322.1|EE098322
EST:     TAGCCCTTGCCCTTGCGTGCCTTCTCTCTCGCAACTTCACCGCAGCCATG                         ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG
genomic: TAGCCCTTGCCCTTGCGTGCCTTCTCTCTCGCAACTTCACCGCAGCCATGgcgagtcttc ... cattgtgcagATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG
EST: gi|32268119|gb|CD717278.1|CD717278
EST:     TAGCCCTTGCCCTTGCGTGCCTTCTCTCTCGCAACTTCACCGCAGCCATG                         ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG
genomic: TAGCCCTTGCCCTTGCGTGCCTTCTCTCTCGCAACTTCACCGCAGCCATGgcgagtcttc ... cattgtgcagATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG
EST: gi|110401412|gb|EC968022.1|EC968022
EST:     CGCAACTTCACCGCAGCCATG                         ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG
genomic: CGCAACTTCACCGCAGCCATGgcgagtcttc ... cattgtgcagATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG
EST: gi|37189321|gb|CF608670.1|CF608670
EST:     TAGCCCTTGCCCTTGCGTGCCTTCTCTCTCGCAACTTCACCGCAGCCATG                         ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG
genomic: TAGCCCTTGCCCTTGCGTGCCTTCTCTCTCGCAACTTCACCGCAGCCATGgcgagtcttc ... cattgtgcagATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG
EST: gi|110692508|gb|EE071834.1|EE071834
EST:     CTTCTCTCTCGCAACTTCACCGCAGCCATG                         ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG
genomic: CTTCTCTCTCGCAACTTCACCGCAGCCATGgcgagtcttc ... cattgtgcagATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG