1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
CAATCTCCCACTTCTTCTCAAGAGGATGGAGTTCTGCCTGAATTCGAGAAAACCCCATgtaaatcttccattgattttcttcgattttactgtttttggttgttttctgaattgggttttcttatttttccattctggtttctgggttttatttgaatcttttttggtttttttttttttttttgcacag
species | Vitis vinifera |
transcript | Vv16s0050g01110.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CACTTCTTCTCAAGAGGATGGAGTTCTGCCTGAATTCGAGAAAACCCCAT GCTCTGGGGATTGTTTCAGCGGTTCTAATATTGGGGCTTTTGAGTTTCCGAEST: gi|161721296|gb|FC070042.1|FC070042
genomic: CACTTCTTCTCAAGAGGATGGAGTTCTGCCTGAATTCGAGAAAACCCCATgtaaatcttc ... ttttgcacagGCTCTGGGGATTGTTTTAGCGGTTCTAATATTGGGGCTTTTGAGTTTCCGA
EST: TCAAGAGGATGGAGTTCTGCCTGAATTCGAGAAAACCCCAT GCTCTGGGGATTGTTTTAGCGGTTCTAATATTGGGGCTTTTGAGTTTCCGAEST: gi|351014648|gb|FQ437650.1|FQ437650
genomic: TCAAGAGGATGGAGTTCTGCCTGAATTCGAGAAAACCCCATgtaaatcttc ... ttttgcacagGCTCTGGGGATTGTTTTAGCGGTTCTAATATTGGGGCTTTTGAGTTTCCGA
EST: CACTTCTTCTCAAGAGGATGGAGTTCTGCCTGAATTCGAGAAAACCCCAT GCTCTGGGGATTGTTTTAGCGGTTCTAATATTGGGGCTTTTGAGTTTCCGAEST: gi|37190160|gb|CF609509.1|CF609509
genomic: CACTTCTTCTCAAGAGGATGGAGTTCTGCCTGAATTCGAGAAAACCCCATgtaaatcttc ... ttttgcacagGCTCTGGGGATTGTTTTAGCGGTTCTAATATTGGGGCTTTTGAGTTTCCGA
EST: CTTCTTCTCAAGAGGATGGAGTTCTGCCTGAATTCGAGAAAACCCCAT GCTCTGGGGATTGTTTCAGCGGTTCTAATATTGGGGC--TTGAGTTTCCGAEST: gi|110698435|gb|EE075933.1|EE075933
genomic: CTTCTTCTCAAGAGGATGGAGTTCTGCCTGAATTCGAGAAAACCCCATgtaaatcttc ... ttttgcacagGCTCTGGGGATTGTTTTAGCGGTTCTAATATTGGGGCTTTTGAGTTTCCGA
EST: ATGGAGTTCTGCCTGAATTCGAGAAAACCCCAT GCTCTGGGGATTGTTTCAGCGGCTCTAATATTGGGGCTTTTGAGTTTCCGA
genomic: ATGGAGTTCTGCCTGAATTCGAGAAAACCCCATgtaaatcttc ... ttttgcacagGCTCTGGGGATTGTTTTAGCGGTTCTAATATTGGGGCTTTTGAGTTTCCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAATCTCCCACTTCTTCTCAAGAGGATGGAGTTCTGCCTGAATTCGAGAAAACCCCATgtaaatcttccattgattttcttcgattttactgtttttggttgttttctgaattgggttttcttatttttccattctggtttctgggttttatttgaatcttttttggtttttttttttttttttgcacag
- - - - - - - - - AAGAGG
- - - - - - - - - - AGAGGA
- - - - - - - - - - GAGGAT
- - - - - - - - - - - AGGATG
- - - - - - - - - - - - GATGGA