Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAATAGTGGCTCAGAGAAGACGAACAACACCATTGTTCAGATCAACAAGATCTTCAAGGACGGTATTGGCCTCGGTGGCATTTTCCACAGCGCTGTGCAGgtctttctctctttataaatccgtctgtttttatctatatgcgtggttgtcaattgttttgaattgttagggtttttatttttattttcatttttttttg...

Basic information

species Vitis vinifera
transcript Vv16s0050g01050.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0050g01050.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os10g38970.1 (Oryza sativa), 5'ss of exon 1
TAATAGTGGCTCAGAGAAGACGAACAACACCATTGTTCAGATCAACAAGATCTTCAAGGACGGTATTGGCCTCGGTGGCATTTTCCACAGCGCTGTGCAGgtctttctct-ctttataaatccgtctgtttttatctatatgcgtggttgtcaattgttttgaatt-gttagggtttttatttttattttcatttttttttg----------------------------------------------
 || || | ||| ||||||||||||||||||||  | |||||||||   |||||||||||| | || |||||||| ||||| ||||||||||| || |||||    |||  |         | |        ||   |   |||   |||    ||| || |  || |      ||  |  |     | ||  |  |||| |                                              
GAACAGCGACTCGGAGAAGACGAACAACACCATCCTCCAGATCAACCGCATCTTCAAGGACCGGATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGgttcgcctccgcgcggcctcccagatcccccctagtgaggggcgcatttgctt-ttgcttcgccttcgccttccttcctcctccagatctcgctgattttggttggttctctctcgcccttttttgttcggatcccggaggtgcgcag

upper sequence: Vv16s0050g01050.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G162292_T02 (Zea mays), 5'ss of exon 1
TAATAGTGGCTCAGAGAAGACGAACAACACCATTGTTCAGATCAACAAGATCTTCAAGGACGGTATTGGCCTCGGTGGCATTTTCCACAGCGCTGTGCAGgtctt---------tctctctttataaatccgtctgtttttatctatatgc--gtggttgtcaattgt-tttgaattgttagggtttttatttttattttcatttttttttg------------
 || |||| ||| ||||||||||||||||||||  | |||||||||   |||||||||||| | || |||||||| ||||| ||||||||||| || |||||  |         || |   |      ||| ||     |     | || |  | |   | |  |||  |     || |   | |   ||  | |     ||||| ||                
CAACAGTGACTCCGAGAAGACGAACAACACCATCCTCCAGATCAACCGCATCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGgtagtgggcctggctcccctctcccccttccctcgccaatcgctcagatcccagggaccgacgcttgcgtgccgcttctccagatccctaaatctcacgccatttcttgaacccctcaacgcag

upper sequence: Vv16s0050g01050.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA16G29860.2 (Glycine max), 5'ss of exon 1
TAATAGTGGCTCAGAGAAGACGAACAACACCATTGTTCAGATCAACAAGATCTTCAAGGACGGTATTGGCCTCGGTGGCATTTTCCACAGCGCTGTGCAGgtctttctctctttataaatccgtctgtttttatctatatgcgtggttgtcaattgtttt-gaattgttagggtt--tttatttttattttcatttttttttg
 |||||||| || ||||| || |||||||||||||||||||||||||||||||||||||| || ||||| || |||||||||||||||||||| |||||||||||  ||   |  |||| |  | |||    ||| || |   | |||     ||||||  | ||||  | ||||  ||   | |  ||||  ||  | ||| 
GAATAGTGGATCCGAGAAAACCAACAACACCATTGTTCAGATCAACAAGATCTTCAAGGATGGGATTGGTCTTGGTGGCATTTTCCACAGCGCCGTGCAGgtcttgttcctctcttaaaac--tttgtagaaatcaatgtttcttgtttgttgttgtttgaggattgacacggtttattggatctggtttttcttcctgttt-

upper sequence: Vv16s0050g01050.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA09G24630.1 (Glycine max), 5'ss of exon 1
TAATAGTGGCTCAGAGAAGACGAACAACACCATTGTTCAGATCAACAAGATCTTCAAGGACGGTATTGGCCTCGGTGGCATTTTCCACAGCGCTGTGCAGgtctttctctctttataaatccgtctgtttttatctatatgcgtggttgtcaattgt-tttgaattgttag--ggtttttatttttattttcatttttttttg
 |||||||| || ||||| || |||| ||||||||||||||||||||||||||||||||| || ||||| || |||||||| |||||||||||||||||||| ||  ||    | |||||   |  ||    ||| || |   || || |   | |  ||   | ||||    || | |  ||||| || |  || |||| ||
GAATAGTGGATCCGAGAAAACCAACAGCACCATTGTTCAGATCAACAAGATCTTCAAGGATGGGATTGGTCTTGGTGGCATCTTCCACAGCGCTGTGCAGgttttgttcctcctctaaat---ttcgtagaaatcaatgtttctgtttttttttaggattcacactgtttattggatctggtttttcttgttcttgttttgtg

upper sequence: Vv16s0050g01050.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT4G25680.1 (Arabidopsis thaliana), 5'ss of exon 1
TAATAGTGGCTCAGAGAAGACGAACAACACCATTGTTCAGATCAACAAGATCTTCAAGGACGGTATTGGCCTCGGTGGCATTTTCCACAGCGCTGTGCAGgtctttctctctttataaatccgtctgtttttatctatatgcgtggttgtcaattgttttgaattgttagggtttttatttttattttcatttt-tttttg
 || ||||| || |||||||| ||||||||||||||||||||||| | | ||||||| ||||| || || || || || || |||||||||||| | |||||  | ||||   | || || | | ||  | ||  | ||||     || || ||  | |  ||   |     |  |    ||||| |  ||||  ||||||
GAACAGTGGATCGGAGAAGACTAACAACACCATTGTTCAGATCAATAGGTTCTTCAAAGACGGGATCGGTCTTGGCGGTATATTCCACAGCGCTATTCAGgtactactcttcgtctatattc-tatgaatctacatttatgtacaattatcgatgatgtctaagcttggttttggtctactttatgtagatttggtttttg

upper sequence: Vv16s0050g01050.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT4G25660.1 (Arabidopsis thaliana), 5'ss of exon 1
TAATAGTGGCTCAGAGAAGACGAACAACACCATTGTTCAGATCAACAAGATCTTCAAGGACGGTATTGGCCTCGGTGGCATTTTCCACAGCGCTGTGCAGgtctttctctctttataaatccgtctgtttttatctatatgc--gtggttgtcaattgt-tttgaattgttagggtttttatttttattttcatttttttttg
 || ||||| ||||||||||| ||||||||||| ||||||||||| | | ||||||| ||||| || || || || || || |||||||||||| | |||||  | ||       |   ||  ||| | ||  ||| ||  |      |   ||  ||    || || | |   || | | |||| | ||    ||| | |  
GAACAGTGGATCAGAGAAGACTAACAACACCATAGTTCAGATCAATAGGTTCTTCAAAGACGGGATCGGTCTTGGCGGTATATTCCACAGCGCTATTCAGgtactactactccactgcctcgatct-tcttcgtctttagtctatcaatctacatctgcacatgtatcgatgatgtctctcttttgagttgttgtttgtgt--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161713166|gb|FC064316.1|FC064316
EST:     TCTTCAAGGACGGTATTGGCCTCGGTGGCATTTTCCACAGCGCTGTGCAG                         GTTTATGGAGATGATGAATGGTCATTTGGATTCTGTGAACAAGGAACTGGA
genomic: TCTTCAAGGACGGTATTGGCCTCGGTGGCATTTTCCACAGCGCTGTGCAGgtctttctct ... tattggacagGTTTATGGAGATGATGAATGGTCATTTGGATTCTGTGAACAAGGAACTGGA
EST: gi|110730010|gb|EE106598.1|EE106598
EST:     TCTTCAAGGACGGTATTGGCCTCGGTGGCATTTTCCACAGCGCTGTGCAG                         GTTTATGGAGATGATGAATGGTCATTTGGATTCTGTGAACAAGGAACTGGA
genomic: TCTTCAAGGACGGTATTGGCCTCGGTGGCATTTTCCACAGCGCTGTGCAGgtctttctct ... tattggacagGTTTATGGAGATGATGAATGGTCATTTGGATTCTGTGAACAAGGAACTGGA
EST: gi|110712053|gb|EE089238.1|EE089238
EST:     TCTTCAAGGACGGTATTGGCCTCGGTGGCATTTTCCACAGCGCTGTGCAG                         GTTTATGGAGATGATGAATGGTCATTTGGATTCTGTGAACAAGGAACTGGA
genomic: TCTTCAAGGACGGTATTGGCCTCGGTGGCATTTTCCACAGCGCTGTGCAGgtctttctct ... tattggacagGTTTATGGAGATGATGAATGGTCATTTGGATTCTGTGAACAAGGAACTGGA