Skip to another splice site:
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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTCGACTTTGGTTCCTCAACCGGGTCTTGGTCCTTTCTCCTCCTGGAATGGTCTAAGGCATCTGGGTATCTCTGTTAAACAAAAATCTCTCAAAATAGgtgcttttttcatctgggtatttgggaattttgtttttttgcaaattgttcttggatttgagttgatttagggttttgctcatctgcgtatgcttgtttatggaattctatttag

Basic information

species Vitis vinifera
transcript Vv16s0050g00800.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351024828|gb|FQ430653.1|FQ430653
EST:     TGGTCTAAGGCATCTGGGTATCTCTGTTAAACAAAAATCTCTCAAAATAG                         GAAGAAGAGGAAGGTGCAAAGGGAAAGTGGTTTATGCATCTCTGTTTGGGG
genomic: TGGTCTAAGGCATCTGGGTATCTCTGTTAAACAAAAATCTCTCAAAATAGgtgctttttt ... ttctatttagGAAGAAGAGGAAGGTGCAAAGGGAAAGTGGTTTATGCATCTCTGTTTGGGG
EST: gi|351014666|gb|FQ437866.1|FQ437866
EST:     TGGTCTAAGGCATCTGGGTATCTCGGTTAAACAAAAATCTCTCAAAATAG                         GAAGAAGAGGAAGGTGCAAAGGGAAAGTGGTTTATGCATCTCTGTTTGGGG
genomic: TGGTCTAAGGCATCTGGGTATCTCTGTTAAACAAAAATCTCTCAAAATAGgtgctttttt ... ttctatttagGAAGAAGAGGAAGGTGCAAAGGGAAAGTGGTTTATGCATCTCTGTTTGGGG
EST: gi|351024434|gb|FQ426243.1|FQ426243
EST:     TGGTCTAAGGCATCTGGGTATCTCTGTTAAACAAAAATCTCTCAAAATAG                         GAAGAAGAGGAAGGTGCAAAGGGAAAGTGGTTTATGCATCTCTGTTTGGGG
genomic: TGGTCTAAGGCATCTGGGTATCTCTGTTAAACAAAAATCTCTCAAAATAGgtgctttttt ... ttctatttagGAAGAAGAGGAAGGTGCAAAGGGAAAGTGGTTTATGCATCTCTGTTTGGGG
EST: gi|110375864|gb|EC940884.1|EC940884
EST:     TGGTCTAAGGCATCTGGGTATCTCTGTTAAACAAAAATCTCTCAAAATAG                         GAAGAAGAGGAAGGTGCAAAGGGAAAGTGGTTTATGCATCTCTGTTTGGGG
genomic: TGGTCTAAGGCATCTGGGTATCTCTGTTAAACAAAAATCTCTCAAAATAGgtgctttttt ... ttctatttagGAAGAAGAGGAAGGTGCAAAGGGAAAGTGGTTTATGCATCTCTGTTTGGGG
EST: gi|161709637|gb|FC058421.1|FC058421
EST:     TGGTCTAAGGCATCTGGGTATCTCTGTTAAACAAAAATCTCTCAAAATAG                         GAAGAAGAGGAAGGTGCAAAGGGAAAGTGGTTTATGCATCTCTGTTTGGGG
genomic: TGGTCTAAGGCATCTGGGTATCTCTGTTAAACAAAAATCTCTCAAAATAGgtgctttttt ... ttctatttagGAAGAAGAGGAAGGTGCAAAGGGAAAGTGGTTTATGCATCTCTGTTTGGGG
EST: gi|77581466|gb|DV219665.1|DV219665
EST:     TGGTCTAAGGCATCTGGGTATCTCTGTTAAACAAAAATCTCTCAAAATAG                         GAAGAAAAGGAAGGTGCAAAGGGAAAGTGGTTTATGCATCTCTGTTTGGGG
genomic: TGGTCTAAGGCATCTGGGTATCTCTGTTAAACAAAAATCTCTCAAAATAGgtgctttttt ... ttctatttagGAAGAAGAGGAAGGTGCAAAGGGAAAGTGGTTTATGCATCTCTGTTTGGGG
EST: gi|110387630|gb|EC952313.1|EC952313
EST:     TGGTCTAAGGCATCTGGGTATCTCTGTTAAACAAAAATCTCTCAAAATAG                         GAAGAAGAGGAAGGTGCAAAGGGAAAGTGGTTTATGCATCTCTGTTTGGGG
genomic: TGGTCTAAGGCATCTGGGTATCTCTGTTAAACAAAAATCTCTCAAAATAGgtgctttttt ... ttctatttagGAAGAAGAGGAAGGTGCAAAGGGAAAGTGGTTTATGCATCTCTGTTTGGGG
EST: gi|351026337|gb|FQ428349.1|FQ428349
EST:     TGGTCTAAGGCATCTGGGTATCTCTGTTAAACAAAAACCTCTCAAAATAG                         GAAGAAGAGGAAGGTGCAAAGGGAAAGTGGTTTATGCATCTCTGTTTGGGG
genomic: TGGTCTAAGGCATCTGGGTATCTCTGTTAAACAAAAATCTCTCAAAATAGgtgctttttt ... ttctatttagGAAGAAGAGGAAGGTGCAAAGGGAAAGTGGTTTATGCATCTCTGTTTGGGG
EST: gi|110402322|gb|EC959863.1|EC959863
EST:     TGGTCTAAGGCATCTGGGTATCTCTGTTAAACAAAAATCTCTCAAAATAG                         GAAGAAGAGGAAGGTGCAAAGGGAAAGTGGTTTATGCATCTCTGTTTGGGG
genomic: TGGTCTAAGGCATCTGGGTATCTCTGTTAAACAAAAATCTCTCAAAATAGgtgctttttt ... ttctatttagGAAGAAGAGGAAGGTGCAAAGGGAAAGTGGTTTATGCATCTCTGTTTGGGG
EST: gi|26262405|gb|CA813468.1|CA813468
EST:     TGGTCTAAGGCATCTGGGTATCTCTGTTAAACAAAAATCTCTCAAAATAG                         GAAGAAGAGGAAGGTGCAAAGGGAAAGTGGTTTATGCATCTCTGTTTGGGG
genomic: TGGTCTAAGGCATCTGGGTATCTCTGTTAAACAAAAATCTCTCAAAATAGgtgctttttt ... ttctatttagGAAGAAGAGGAAGGTGCAAAGGGAAAGTGGTTTATGCATCTCTGTTTGGGG
EST: gi|161716016|gb|FC068769.1|FC068769
EST:     TGGTCTAAGGCATCTGGGTATCTCTGTTAAACAAAAATCTCTCAAAATAG                         GAAGAAGAGGAAGGTGCAAAGGGAAAGTGGTTTATGCATCTCTGTTTGGGG
genomic: TGGTCTAAGGCATCTGGGTATCTCTGTTAAACAAAAATCTCTCAAAATAGgtgctttttt ... ttctatttagGAAGAAGAGGAAGGTGCAAAGGGAAAGTGGTTTATGCATCTCTGTTTGGGG
EST: gi|351025830|gb|FQ427842.1|FQ427842
EST:     TGGTCTAAGGCATCTGGGTATCTCTGTTAAACAAAAATCTCTCAAAATAG                         GAAGAAGAGGAAGGTGCAAAGGGAAAGTGGTTTATGCATCTCTGTTTGGGG
genomic: TGGTCTAAGGCATCTGGGTATCTCTGTTAAACAAAAATCTCTCAAAATAGgtgctttttt ... ttctatttagGAAGAAGAGGAAGGTGCAAAGGGAAAGTGGTTTATGCATCTCTGTTTGGGG