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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCACTCGACCCCTCAGGCGCAGCTAAAGgtaagcattttacaaaaatctgtggaaaattagaaatggtcgattactgaatggtgatgatgtaggaagggttttgtttattgaaaaaattcgtctgtat...

Basic information

species Vitis vinifera
transcript Vv16s0050g00610.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110429139|gb|EC995628.1|EC995628
EST:     CCCCTCAGGCGCAGCTAAAG                         GTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACA
genomic: CCCCTCAGGCGCAGCTAAAGgtaagcattt ... gttgaagcagGTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACA
EST: gi|110385689|gb|EC950235.1|EC950235
EST:     TCCACTCGACCCCTCAGGCGCAGCTAAAG                         GTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACA
genomic: TCCACTCGACCCCTCAGGCGCAGCTAAAGgtaagcattt ... gttgaagcagGTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACA
EST: gi|110422139|gb|EC988452.1|EC988452
EST:     TCCACTCGACCCCTCAGGCGCAGCTAAAG                         GTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACA
genomic: TCCACTCGACCCCTCAGGCGCAGCTAAAGgtaagcattt ... gttgaagcagGTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACA
EST: gi|87584541|gb|DY473667.1|DY473667
EST:     CTCAGGCGCAGCTAAAG                         GTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACA
genomic: CTCAGGCGCAGCTAAAGgtaagcattt ... gttgaagcagGTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACA
EST: gi|110424794|gb|EC991167.1|EC991167
EST:     CGACCCCTCAGGCGCAGCTAAAG                         GTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACA
genomic: CGACCCCTCAGGCGCAGCTAAAGgtaagcattt ... gttgaagcagGTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACA
EST: gi|37189943|gb|CF609292.1|CF609292
EST:     TCCACTCGACCCCTCAGGCGCAGCTAAAG                         GTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACA
genomic: TCCACTCGACCCCTCAGGCGCAGCTAAAGgtaagcattt ... gttgaagcagGTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACA
EST: gi|87586274|gb|DY474608.1|DY474608
EST:     CTCGACCCCTCAGGCGCAGCTAAAG                         GTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACA
genomic: CTCGACCCCTCAGGCGCAGCTAAAGgtaagcattt ... gttgaagcagGTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACA
EST: gi|110692560|gb|EE071942.1|EE071942
EST:     TCCACTCGACCCCTCAGGCGCAGCTAAAG                         GTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACA
genomic: TCCACTCGACCCCTCAGGCGCAGCTAAAGgtaagcattt ... gttgaagcagGTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACA
EST: gi|110693783|gb|EE070314.1|EE070314
EST:     TCCACTCGACCCCTCAGGCGCAGCTAAAG                         GTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACA
genomic: TCCACTCGACCCCTCAGGCGCAGCTAAAGgtaagcattt ... gttgaagcagGTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACA
EST: gi|83277254|gb|DV941262.1|DV941262
EST:     ACCCCTCAGGCGCAGCTAAAG                         GTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACA
genomic: ACCCCTCAGGCGCAGCTAAAGgtaagcattt ... gttgaagcagGTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACA
EST: gi|110405321|gb|EC970861.1|EC970861
EST:     TCCACTCGACCCCTCAGGCGCAGCTAAAG                         GTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACA
genomic: TCCACTCGACCCCTCAGGCGCAGCTAAAGgtaagcattt ... gttgaagcagGTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACA
EST: gi|33405067|gb|CF210694.1|CF210694
EST:     TCCACTCGACCCCTCAGGCGCAGCTAAAG                         GTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACA
genomic: TCCACTCGACCCCTCAGGCGCAGCTAAAGgtaagcattt ... gttgaagcagGTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACA
EST: gi|110405586|gb|EC971129.1|EC971129
EST:     CCCCTCAGGCGCAGCTAAAG                         GTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACA
genomic: CCCCTCAGGCGCAGCTAAAGgtaagcattt ... gttgaagcagGTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACA
EST: gi|110419315|gb|EC985532.1|EC985532
EST:     CCCCTCAGGCGCAGCTAAAG                         GTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACA
genomic: CCCCTCAGGCGCAGCTAAAGgtaagcattt ... gttgaagcagGTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACA
EST: gi|110732418|gb|EE107685.1|EE107685
EST:     CCACTCGACCCCTCAAGCGCAGCTAAAG                         GTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACA
genomic: CCACTCGACCCCTCAGGCGCAGCTAAAGgtaagcattt ... gttgaagcagGTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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TCCACTCGACCCCTCAGGCGCAGCTAAAGgtaagcattttacaaaaatctgtggaaaattagaaatggtcgattactgaatggtgatgatgtaggaagggttttgtttattgaaaaaattcgtctgtat

- - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaat