Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGCTCCCAAGGATGTGACCGAGGAGAAAGCCGTAATTCCGCCAGCTCCTCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAAAgtattctctttttctcttctctcttctttttgcctttttttttttcccaactttttgaagtttttagcaactctgtttggttggtgagaaaaggaaggaa...

Basic information

species Vitis vinifera
transcript Vv16s0050g00080.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110397997|gb|EC964042.1|EC964042
EST:     TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAAA                         AGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
genomic: TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAAAgtattctctt ... ttcaatccagAGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
EST: gi|349827462|gb|FQ422330.1|FQ422330
EST:     TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAAA                         AGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGT---C-
genomic: TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAAAgtattctctt ... ttcaatccagAGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
EST: gi|110701591|gb|EE079339.1|EE079339
EST:     TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAGA                         AGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
genomic: TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAAAgtattctctt ... ttcaatccagAGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
EST: gi|351020365|gb|FQ445972.1|FQ445972
EST:     TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAGA                         AGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
genomic: TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAAAgtattctctt ... ttcaatccagAGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
EST: gi|110692641|gb|EE072119.1|EE072119
EST:     TCCTCCGGAAGAGAAGCCTGACGAAACCAAAGCACTCGCCATCGTCGAGA                         AGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
genomic: TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAAAgtattctctt ... ttcaatccagAGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
EST: gi|110374943|gb|EC939889.1|EC939889
EST:     TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAGA                         AGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
genomic: TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAAAgtattctctt ... ttcaatccagAGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
EST: gi|110394019|gb|EC958374.1|EC958374
EST:     TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAGA                         AGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
genomic: TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAAAgtattctctt ... ttcaatccagAGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
EST: gi|56409507|gb|CX017759.1|CX017759
EST:     TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAGA                         AGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
genomic: TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAAAgtattctctt ... ttcaatccagAGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
EST: gi|29783949|gb|CB344101.2|CB344101
EST:     TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAAA                         AGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
genomic: TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAAAgtattctctt ... ttcaatccagAGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
EST: gi|37190279|gb|CF609628.1|CF609628
EST:     TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAAA                         AGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
genomic: TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAAAgtattctctt ... ttcaatccagAGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
EST: gi|30322525|gb|CD005787.1|CD005787
EST:     TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAGA                         AGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
genomic: TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAAAgtattctctt ... ttcaatccagAGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
EST: gi|37186543|gb|CF605896.1|CF605896
EST:     TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAGA                         AGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
genomic: TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAAAgtattctctt ... ttcaatccagAGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
EST: gi|77579827|gb|DV218793.1|DV218793
EST:     TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAGA                         AGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
genomic: TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAAAgtattctctt ... ttcaatccagAGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
EST: gi|33406229|gb|CF211856.1|CF211856
EST:     TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAAA                         AGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
genomic: TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAAAgtattctctt ... ttcaatccagAGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
EST: gi|27755276|gb|CB036031.1|CB036031
EST:     TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAGA                         AGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
genomic: TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAAAgtattctctt ... ttcaatccagAGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
EST: gi|110366193|gb|EC929937.1|EC929937
EST:     TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAGA                         AGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
genomic: TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAAAgtattctctt ... ttcaatccagAGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
EST: gi|33406137|gb|CF211764.1|CF211764
EST:     TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAAA                         AGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
genomic: TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAAAgtattctctt ... ttcaatccagAGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
EST: gi|110380609|gb|EC945888.1|EC945888
EST:     TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAGA                         AGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
genomic: TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAAAgtattctctt ... ttcaatccagAGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
EST: gi|28965124|gb|CB344157.1|CB344157
EST:     CATCGTCGAAA                         AGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
genomic: CATCGTCGAAAgtattctctt ... ttcaatccagAGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
EST: gi|56409736|gb|CX017988.1|CX017988
EST:     TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAGA                         AGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
genomic: TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAAAgtattctctt ... ttcaatccagAGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
EST: gi|110416964|gb|EC982982.1|EC982982
EST:     TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAGA                         AGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
genomic: TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAAAgtattctctt ... ttcaatccagAGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
EST: gi|71872560|gb|DT021615.1|DT021615
EST:     TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAGA                         AGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
genomic: TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAAAgtattctctt ... ttcaatccagAGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
EST: gi|110693803|gb|EE070355.1|EE070355
EST:     TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAGA                         AGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
genomic: TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAAAgtattctctt ... ttcaatccagAGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
EST: gi|351057040|gb|FQ448557.1|FQ448557
EST:     TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATTGTCGAAA                         AGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
genomic: TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAAAgtattctctt ... ttcaatccagAGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
EST: gi|352795758|gb|FQ480346.1|FQ480346
EST:     TCCTCCGGAAGAGAAGCCTGATTAAACCAAAGCACTCGCCATCGTCGAGA                         AGGTTCCAGAACCCATTGAAGAGAAGGGCTCTGAGGGTGGTTCTGTCAACA
genomic: TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAAAgtattctctt ... ttcaatccagAGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
EST: gi|351033526|gb|FQ446992.1|FQ446992
EST:     TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAAA                         AGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
genomic: TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAAAgtattctctt ... ttcaatccagAGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
EST: gi|110708527|gb|EE086168.1|EE086168
EST:     TCCTCCGGAAGAGAAGCCTGACGAAACCAAAGCACTCGCCATCGTCGAGA                         AGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
genomic: TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAAAgtattctctt ... ttcaatccagAGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
EST: gi|110422273|gb|EC988591.1|EC988591
EST:     TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAGA                         AGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
genomic: TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAAAgtattctctt ... ttcaatccagAGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
EST: gi|351019268|gb|FQ429428.1|FQ429428
EST:     TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAAA                         AGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
genomic: TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAAAgtattctctt ... ttcaatccagAGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
EST: gi|110418793|gb|EC984969.1|EC984969
EST:     TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAGA                         AGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
genomic: TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAAAgtattctctt ... ttcaatccagAGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
EST: gi|351023530|gb|FQ432913.1|FQ432913
EST:     TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAAA                         AGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
genomic: TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAAAgtattctctt ... ttcaatccagAGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
EST: gi|27580860|gb|CB003555.1|CB003555
EST:     TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAGA                         AGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
genomic: TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAAAgtattctctt ... ttcaatccagAGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
EST: gi|110412405|gb|EC978153.1|EC978153
EST:     GCCTGATGAAACCAAAGCACTCGCCATCGTCGAGA                         AGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
genomic: GCCTGATGAAACCAAAGCACTCGCCATCGTCGAAAgtattctctt ... ttcaatccagAGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
EST: gi|71858022|gb|DT007077.1|DT007077
EST:     TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAAA                         AGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
genomic: TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAAAgtattctctt ... ttcaatccagAGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
EST: gi|351020250|gb|FQ445857.1|FQ445857
EST:     TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAAA                         AGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA
genomic: TCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAAAgtattctctt ... ttcaatccagAGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAGCTCCCAAGGATGTGACCGAGGAGAAAGCCGTAATTCCGCCAGCTCCTCCTCCGGAAGAGAAGCCTGATGAAACCAAAGCACTCGCCATCGTCGAAAgtattctctttttctcttctctcttctttttgcctttttttttttcccaactttttgaagtttttagcaactctgtttggttggtgagaaaaggaaggaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagaaaa