1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CACGGCTTCTACGAGCCGGACTCCGCCGCTTCAGATGCCGACCACCGGTTCGCTCAGATCCGAATGATCGAAGAGAGCCTCCGGTTCGCCGGAGTTTCCGgttcgcctgctttttttttttttgctatgtgtttctttatttctctaccgtttaaggtggtggcgcgtgagtggcgcgtgacggtgggtgtctgtgtttgtgttgttgcag
species | Vitis vinifera |
transcript | Vv16s0039g01410.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGCTCAGATCCGAATGATCGAAGAGAGCCTCCGGTTCGCCGGAGTTTCCG AGGAGGGAGAGAAGAGGCCAAAGAGAGTGGTGGATGTGGGGTGTGGGATTGEST: gi|37183670|gb|CF603024.1|CF603024
genomic: CGCTCAGATCCGAATGATCGAAGAGAGCCTCCGGTTCGCCGGAGTTTCCGgttcgcctgc ... gttgttgcagAGGAGGGAGAGAAGAGGCCAAAGAGAGTGGTGGATGTGGGGTGTGGGATTG
EST: CGCTCAGATCCGAATGATCGAAGAGAGCCTCCGGTTCGCCGGAGTTTCCG AGGAGGGAGAGAAGAGGCCAAAGAGAGTGGTGGATGTGGGGTNGTGGGATTEST: gi|71859120|gb|DT008175.1|DT008175
genomic: CGCTCAGATCCGAATGATCGAAGAGAGCCTCCGGTTCGCCGGAGTTTCCGgttcgcctgc ... gttgttgcagAGGAGGGAGAGAAGAGGCCAAAGAGAGTGGTGGATGTGGGGT-GTGGGATT
EST: CGCTCAGATCCGAATGATCGAAGAGAGCCTCCGGTTCGCCGGAGTTTCCG AGGAGGGAGAGAAGAGGCCAAAGAGAGTGGTGGATGTGGGGTGTGGGATTGEST: gi|34547143|gb|CF515375.1|CF515375
genomic: CGCTCAGATCCGAATGATCGAAGAGAGCCTCCGGTTCGCCGGAGTTTCCGgttcgcctgc ... gttgttgcagAGGAGGGAGAGAAGAGGCCAAAGAGAGTGGTGGATGTGGGGTGTGGGATTG
EST: CGCTCAGATCCGAATGATCGAAGAGAGCCTCCGGTTCGCCGGAGTTTCCG AGGAGGGAGAGAAGAGGCCAAAGAGAGTGGTGGATGTGGGGTGTGGGATTGEST: gi|28960633|gb|CB340324.1|CB340324
genomic: CGCTCAGATCCGAATGATCGAAGAGAGCCTCCGGTTCGCCGGAGTTTCCGgttcgcctgc ... gttgttgcagAGGAGGGAGAGAAGAGGCCAAAGAGAGTGGTGGATGTGGGGTGTGGGATTG
EST: CGCTCAGATCCGAATGATCGAAGAGAGCCTCCGGTTCGCCGGAGTTTCCG AGGAGGGAGAGAAGAGGCCAAAGAGAGTGGTGGATGTGGGGTGTGGGATTGEST: gi|351032554|gb|FQ458919.1|FQ458919
genomic: CGCTCAGATCCGAATGATCGAAGAGAGCCTCCGGTTCGCCGGAGTTTCCGgttcgcctgc ... gttgttgcagAGGAGGGAGAGAAGAGGCCAAAGAGAGTGGTGGATGTGGGGTGTGGGATTG
EST: CGCTCAGATCCGAATGATCGAAGAGAGCCTCCGGTTCGCCGGAGTTTCTG AGGAGGGAGAGAAGGGGCCAAAGAGAGTGGTGGATGTGGGGTGTGGGATTGEST: gi|46917781|gb|CN547110.1|CN547110
genomic: CGCTCAGATCCGAATGATCGAAGAGAGCCTCCGGTTCGCCGGAGTTTCCGgttcgcctgc ... gttgttgcagAGGAGGGAGAGAAGAGGCCAAAGAGAGTGGTGGATGTGGGGTGTGGGATTG
EST: CGCTCAGATCCGAATGATCGAAGAGAGCCTCCGGTTCGCCGGAGTTTCCG AGGAGGGAGAGAAGAGGCCAAAGAGAGTGGTGGATGTGGGGTGTGGGEST: gi|351057048|gb|FQ448565.1|FQ448565
genomic: CGCTCAGATCCGAATGATCGAAGAGAGCCTCCGGTTCGCCGGAGTTTCCGgttcgcctgc ... gttgttgcagAGGAGGGAGAGAAGAGGCCAAAGAGAGTGGTGGATGTGGGGTGTGGG
EST: CGCTCAGATCCGAATGATCGAAGAGAGCCTCCGGTTCGCCGGAGTTTCTG AGGAGGGAGAGAAGGGGCCAAAGAGAGTGGTGGATGTGGGGTGTGGGATTGEST: gi|352790125|gb|FQ481324.1|FQ481324
genomic: CGCTCAGATCCGAATGATCGAAGAGAGCCTCCGGTTCGCCGGAGTTTCCGgttcgcctgc ... gttgttgcagAGGAGGGAGAGAAGAGGCCAAAGAGAGTGGTGGATGTGGGGTGTGGGATTG
EST: CGCTCAGATCCGAATGATCGAAGAGAGCCTCCGGTTCGCCGGAGTTTCTG AGGAGGGAGAGAAGGGGCCAAAGAGAGTGGTGGATGTGGGGTGTGGGATTGEST: gi|351033929|gb|FQ462984.1|FQ462984
genomic: CGCTCAGATCCGAATGATCGAAGAGAGCCTCCGGTTCGCCGGAGTTTCCGgttcgcctgc ... gttgttgcagAGGAGGGAGAGAAGAGGCCAAAGAGAGTGGTGGATGTGGGGTGTGGGATTG
EST: CGCTCAGATCCGAATGATCGAAGAGAGCCTCCGGTTCGCCGGAGTTTCCG AGGAGGGAGAGAAGAGGCCAAAGAGAGTGGTGGATGTGGGGTGTGGGATTGEST: gi|351037069|gb|FQ465061.1|FQ465061
genomic: CGCTCAGATCCGAATGATCGAAGAGAGCCTCCGGTTCGCCGGAGTTTCCGgttcgcctgc ... gttgttgcagAGGAGGGAGAGAAGAGGCCAAAGAGAGTGGTGGATGTGGGGTGTGGGATTG
EST: CGCTCAGATCCGAATGATCGAAGAGAGCCTCCGGTTCGCCGGAGTTTCCG AGGAGGGAGAGAAGAGGCCAAAGAGAGTGGTGGATGTGGGGTGTGGGATTGEST: gi|351037494|gb|FQ460693.1|FQ460693
genomic: CGCTCAGATCCGAATGATCGAAGAGAGCCTCCGGTTCGCCGGAGTTTCCGgttcgcctgc ... gttgttgcagAGGAGGGAGAGAAGAGGCCAAAGAGAGTGGTGGATGTGGGGTGTGGGATTG
EST: CGCTCAGATCCGAATGATCGAAGAGAGCCTCCGGTTCGCCGGAGTTTCTG AGGAGGGAGAGAAGGGGCCAAAGAGAGTGGTGGATGTGGGGTGTGGGATTG
genomic: CGCTCAGATCCGAATGATCGAAGAGAGCCTCCGGTTCGCCGGAGTTTCCGgttcgcctgc ... gttgttgcagAGGAGGGAGAGAAGAGGCCAAAGAGAGTGGTGGATGTGGGGTGTGGGATTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACGGCTTCTACGAGCCGGACTCCGCCGCTTCAGATGCCGACCACCGGTTCGCTCAGATCCGAATGATCGAAGAGAGCCTCCGGTTCGCCGGAGTTTCCGgttcgcctgctttttttttttttgctatgtgtttctttatttctctaccgtttaaggtggtggcgcgtgagtggcgcgtgacggtgggtgtctgtgtttgtgttgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA