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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCTCCTTTCTCTGCATTTCTTGTTGCTGTTTTCCACTGTGTTTCATTCTCCCTTTTCAAATGGCTAAAAATCCCACCTCAGgttcgtgcttttcttccatacttctttgtatgattgctgttttaggactgaaatctttcttttcggtcagaatttgaactttttataccactattcaaac...

Basic information

species Vitis vinifera
transcript Vv16s0022g02340.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352763391|gb|FQ471703.1|FQ471703
EST:     TCCACTGTGTTTCATTCTCCCTTTTCAAATGGCTAAAAATCCCACCTCAG                         GCAATTATGAAGATCTTCCCCTAAATACAGGAGGAGCAGACAATAAAAGTT
genomic: TCCACTGTGTTTCATTCTCCCTTTTCAAATGGCTAAAAATCCCACCTCAGgttcgtgctt ... ttttatgtagGCAATTATGAAGATCTTCCCCTAAATACAGGAGGAGCAGACAATAAAAGTT
EST: gi|71857203|gb|DT006258.1|DT006258
EST:     ACTGTGTTTCATTCTCCCTTTTCAAATGGCTAAAAATCCCACCTCGG                         GCAATTATGAAGATCTTCCCCTAAATACAGGAGGAGCAGACAATAAAAGTT
genomic: ACTGTGTTTCATTCTCCCTTTTCAAATGGCTAAAAATCCCACCTCAGgttcgtgctt ... ttttatgtagGCAATTATGAAGATCTTCCCCTAAATACAGGAGGAGCAGACAATAAAAGTT