1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TTCATGTAATTCCGGCAGTGGCGGTGGAGGTGGAGGTGATGATGATGGTTTTGTTGTGGATGAAGTTCCGCACTTGACGAATTTTCTGCCTGATTTGCCGgtaattcgagctattattgttgtgatccttagaaagtaaatgtgaattaagtaacatccctttgtttttggataaaggattgatttggaaaactaggaat...
species | Vitis vinifera |
transcript | Vv16s0013g01140.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTGTTGTGGATGAAGTTCCGCACTTGACGAATTTTCTGCCTGATTTGCCG TCATACCCAAACCCATTGCAACAGAACTTAGCTTATACAATAGTCAAEST: gi|161720049|gb|FC068340.1|FC068340
genomic: TTGTTGTGGATGAAGTTCCGCACTTGACGAATTTTCTGCCTGATTTGCCGgtaattcgag ... ttttcttcagTCATACCCAAACCCATTGCAACAGAACTTAGCTTATACAATAGTCAA
EST: TTGTTGTGGATGAAGTTCCGCACTTGACGAATTTTCTGCCTGATTTGCCG TCATACCCAAACCCATTGCAACAGAACTTAGCTTATGCAATAGTCAA
genomic: TTGTTGTGGATGAAGTTCCGCACTTGACGAATTTTCTGCCTGATTTGCCGgtaattcgag ... ttttcttcagTCATACCCAAACCCATTGCAACAGAACTTAGCTTATACAATAGTCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCATGTAATTCCGGCAGTGGCGGTGGAGGTGGAGGTGATGATGATGGTTTTGTTGTGGATGAAGTTCCGCACTTGACGAATTTTCTGCCTGATTTGCCGgtaattcgagctattattgttgtgatccttagaaagtaaatgtgaattaagtaacatccctttgtttttggataaaggattgatttggaaaactaggaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagtaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagtaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggaaaa