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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAAATCGAATCTGAAATGGCGATCCATGGCGTCTGAGCCGGAGGCTTCTTCTTTTGCATCTTCAGTTGATTCCGATTCTTCCGATAAAAACTCCACTGGgtacttccaacttcatattttttttcttgtatatattctgttccctattggaagaaaaataagaattagaaagtgaaagaggagaaatttggttccaaga...

Basic information

species Vitis vinifera
transcript Vv16s0013g00290.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110711613|gb|EE088294.1|EE088294
EST:     TCTTTTGCATCTTCAGTTGATTCCGATTCTTCCGATAAAAACTCCACTGG                         CTTTTGTATTATTGAAGGACCTGAAACAGTACAGGATTTTGCCAAAATGGA
genomic: TCTTTTGCATCTTCAGTTGATTCCGATTCTTCCGATAAAAACTCCACTGGgtacttccaa ... ttgaatgcagCTTTTGTATTATTGAAGGACCTGAAACAGTACAGGATTTTGCCAAAATGGA
EST: gi|110718342|gb|EE095063.1|EE095063
EST:     TCTTTTGCATCTTCAGTTGATTCCGATTCTTCCGATAAAAACTCCACTGG                         CTTTTGTATTATTGAAGGACCTGAAACAGTACAGGATTTTGCCAAAATGGA
genomic: TCTTTTGCATCTTCAGTTGATTCCGATTCTTCCGATAAAAACTCCACTGGgtacttccaa ... ttgaatgcagCTTTTGTATTATTGAAGGACCTGAAACAGTACAGGATTTTGCCAAAATGGA
EST: gi|110719136|gb|EE096769.1|EE096769
EST:     TCTTTTGCATCTTCAGTTGATTCCGATTCTTCCGATAAAAACTCCACTGG                         CTTTTGTATTATTGAAGGACCTGAAACAGTACAGGATTTTGCCAAAATGGA
genomic: TCTTTTGCATCTTCAGTTGATTCCGATTCTTCCGATAAAAACTCCACTGGgtacttccaa ... ttgaatgcagCTTTTGTATTATTGAAGGACCTGAAACAGTACAGGATTTTGCCAAAATGGA
EST: gi|30127958|gb|CB913297.1|CB913297
EST:     TCTTTTGCATCTTCAGTTGATTCCGATTCTTCCGATAAAAACTCCACTGG                         CTTTTGTATTATTGAAGGACCTGAAACAGTACAGGATTTTGCCAAAATGGA
genomic: TCTTTTGCATCTTCAGTTGATTCCGATTCTTCCGATAAAAACTCCACTGGgtacttccaa ... ttgaatgcagCTTTTGTATTATTGAAGGACCTGAAACAGTACAGGATTTTGCCAAAATGGA
EST: gi|27586835|gb|CB009530.1|CB009530
EST:     CCGATTCTTCCGATAAAAACTCCACTGG                         CTTTTGTATTATTGAAGGACCTGAAACAGTACAGGATTTTGCCAAAATGGA
genomic: CCGATTCTTCCGATAAAAACTCCACTGGgtacttccaa ... ttgaatgcagCTTTTGTATTATTGAAGGACCTGAAACAGTACAGGATTTTGCCAAAATGGA
EST: gi|29782311|gb|CB347518.2|CB347518
EST:     GATTCCGATTCTTCCGATAAAAACTCCACTGG                         CTTTTGTATTATTGAAGGACCTGAAACAGTACAGGATTTTGCCAAAATGGA
genomic: GATTCCGATTCTTCCGATAAAAACTCCACTGGgtacttccaa ... ttgaatgcagCTTTTGTATTATTGAAGGACCTGAAACAGTACAGGATTTTGCCAAAATGGA
EST: gi|30126362|gb|CB911701.1|CB911701
EST:     TCTTTTGCATCTTCAGTTGATTCCGATTCTTCCGATAAAAACTCCACTGG                         CTTTTGTATTATTGAAGGACCTGAAACAGTACAGGATTTTGCCAAAATGGA
genomic: TCTTTTGCATCTTCAGTTGATTCCGATTCTTCCGATAAAAACTCCACTGGgtacttccaa ... ttgaatgcagCTTTTGTATTATTGAAGGACCTGAAACAGTACAGGATTTTGCCAAAATGGA
EST: gi|110719556|gb|EE094785.1|EE094785
EST:     TCTTTTGCATCTTCAGTTGATTCCGATTCTTCCGATAAAAACTCCACTGG                         CTTTTGTATTATTGAAGGACCTGAAACAGTACAGGATTTTGCCAAAATGGA
genomic: TCTTTTGCATCTTCAGTTGATTCCGATTCTTCCGATAAAAACTCCACTGGgtacttccaa ... ttgaatgcagCTTTTGTATTATTGAAGGACCTGAAACAGTACAGGATTTTGCCAAAATGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCAAATCGAATCTGAAATGGCGATCCATGGCGTCTGAGCCGGAGGCTTCTTCTTTTGCATCTTCAGTTGATTCCGATTCTTCCGATAAAAACTCCACTGGgtacttccaacttcatattttttttcttgtatatattctgttccctattggaagaaaaataagaattagaaagtgaaagaggagaaatttggttccaaga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agtgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aggagaa