1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TCAAATCGAATCTGAAATGGCGATCCATGGCGTCTGAGCCGGAGGCTTCTTCTTTTGCATCTTCAGTTGATTCCGATTCTTCCGATAAAAACTCCACTGGgtacttccaacttcatattttttttcttgtatatattctgttccctattggaagaaaaataagaattagaaagtgaaagaggagaaatttggttccaaga...
species | Vitis vinifera |
transcript | Vv16s0013g00290.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCTTTTGCATCTTCAGTTGATTCCGATTCTTCCGATAAAAACTCCACTGG CTTTTGTATTATTGAAGGACCTGAAACAGTACAGGATTTTGCCAAAATGGAEST: gi|110718342|gb|EE095063.1|EE095063
genomic: TCTTTTGCATCTTCAGTTGATTCCGATTCTTCCGATAAAAACTCCACTGGgtacttccaa ... ttgaatgcagCTTTTGTATTATTGAAGGACCTGAAACAGTACAGGATTTTGCCAAAATGGA
EST: TCTTTTGCATCTTCAGTTGATTCCGATTCTTCCGATAAAAACTCCACTGG CTTTTGTATTATTGAAGGACCTGAAACAGTACAGGATTTTGCCAAAATGGAEST: gi|110719136|gb|EE096769.1|EE096769
genomic: TCTTTTGCATCTTCAGTTGATTCCGATTCTTCCGATAAAAACTCCACTGGgtacttccaa ... ttgaatgcagCTTTTGTATTATTGAAGGACCTGAAACAGTACAGGATTTTGCCAAAATGGA
EST: TCTTTTGCATCTTCAGTTGATTCCGATTCTTCCGATAAAAACTCCACTGG CTTTTGTATTATTGAAGGACCTGAAACAGTACAGGATTTTGCCAAAATGGAEST: gi|30127958|gb|CB913297.1|CB913297
genomic: TCTTTTGCATCTTCAGTTGATTCCGATTCTTCCGATAAAAACTCCACTGGgtacttccaa ... ttgaatgcagCTTTTGTATTATTGAAGGACCTGAAACAGTACAGGATTTTGCCAAAATGGA
EST: TCTTTTGCATCTTCAGTTGATTCCGATTCTTCCGATAAAAACTCCACTGG CTTTTGTATTATTGAAGGACCTGAAACAGTACAGGATTTTGCCAAAATGGAEST: gi|27586835|gb|CB009530.1|CB009530
genomic: TCTTTTGCATCTTCAGTTGATTCCGATTCTTCCGATAAAAACTCCACTGGgtacttccaa ... ttgaatgcagCTTTTGTATTATTGAAGGACCTGAAACAGTACAGGATTTTGCCAAAATGGA
EST: CCGATTCTTCCGATAAAAACTCCACTGG CTTTTGTATTATTGAAGGACCTGAAACAGTACAGGATTTTGCCAAAATGGAEST: gi|29782311|gb|CB347518.2|CB347518
genomic: CCGATTCTTCCGATAAAAACTCCACTGGgtacttccaa ... ttgaatgcagCTTTTGTATTATTGAAGGACCTGAAACAGTACAGGATTTTGCCAAAATGGA
EST: GATTCCGATTCTTCCGATAAAAACTCCACTGG CTTTTGTATTATTGAAGGACCTGAAACAGTACAGGATTTTGCCAAAATGGAEST: gi|30126362|gb|CB911701.1|CB911701
genomic: GATTCCGATTCTTCCGATAAAAACTCCACTGGgtacttccaa ... ttgaatgcagCTTTTGTATTATTGAAGGACCTGAAACAGTACAGGATTTTGCCAAAATGGA
EST: TCTTTTGCATCTTCAGTTGATTCCGATTCTTCCGATAAAAACTCCACTGG CTTTTGTATTATTGAAGGACCTGAAACAGTACAGGATTTTGCCAAAATGGAEST: gi|110719556|gb|EE094785.1|EE094785
genomic: TCTTTTGCATCTTCAGTTGATTCCGATTCTTCCGATAAAAACTCCACTGGgtacttccaa ... ttgaatgcagCTTTTGTATTATTGAAGGACCTGAAACAGTACAGGATTTTGCCAAAATGGA
EST: TCTTTTGCATCTTCAGTTGATTCCGATTCTTCCGATAAAAACTCCACTGG CTTTTGTATTATTGAAGGACCTGAAACAGTACAGGATTTTGCCAAAATGGA
genomic: TCTTTTGCATCTTCAGTTGATTCCGATTCTTCCGATAAAAACTCCACTGGgtacttccaa ... ttgaatgcagCTTTTGTATTATTGAAGGACCTGAAACAGTACAGGATTTTGCCAAAATGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAAATCGAATCTGAAATGGCGATCCATGGCGTCTGAGCCGGAGGCTTCTTCTTTTGCATCTTCAGTTGATTCCGATTCTTCCGATAAAAACTCCACTGGgtacttccaacttcatattttttttcttgtatatattctgttccctattggaagaaaaataagaattagaaagtgaaagaggagaaatttggttccaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agtgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aggagaa