Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGAACTACTACTTGAGGAAGAAGGTTTTGTATGAGAAGATCGACTTGGACGTAATTCGTGATGTTGATCTGAATAAGCTTGAGCCATGGGACATTCAAGgttgtgcttcatatttagttcatcgcctctcattcttttctcttaattttgcaattcttgttgaatattccatcaagatagcgtgtatcttcccctttgtgatgttcatatcggcttgggtttttgcag

Basic information

species Vitis vinifera
transcript Vv15s0048g02660.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0048g02660.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA07G05660.1 (Glycine max), 5'ss of exon 1
TTGAACTACTACTTGAGGAAGAAGGTTTTGTATGAGAAGATCGACTTGGACGTAATTCGTGATGTTGATCTGAATAAGCTTGAGCCATGGGACATTCAAGgttgtgcttcatatttagttcatcgcctctcattcttttctcttaattttgcaattcttgttgaatattccatcaagatagcgtgtatcttcccctttgtgatgttcatatcggcttgggtttttgcag
 |  | |||||||||||||||||||| |  ||||||||||| ||| | ||||| |||||||| |||||||| || ||||| |||||||||||||| |||||| ||| |  ||||| ||||  || || ||| ||| |   | || | | |    |||       | || | |      |  | || || ||  |   || || ||| |||                   
CTTCAGTACTACTTGAGGAAGAAGGTCTCCTATGAGAAGATTGACCTTGACGTGATTCGTGACGTTGATCTCAACAAGCTCGAGCCATGGGACATACAAGgt-gtgatagatattcagttattcaccactctttcgtgcatattgagtgtttggttcc------acatcctagatgtgtttc-tggatgtttac---tgcgaagttaatag------------------

upper sequence: Vv15s0048g02660.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA16G02200.1 (Glycine max), 5'ss of exon 1
TTGAACTACTACTTGAGGAAGAAGGTTTTGTATGAGAAGATCGACTTGGACGTAATTCGTGATGTTGATCTGAATAAGCTTGAGCCATGGGACATTCAAGgttgtgcttcatatttagttcatcgcctctcattcttttctcttaattttgcaattcttgttgaatattccatcaagatagcgtgtatcttcccctttgtgatgttcatatcggcttgggtttttgcag
 |  | |||||||||||||||||||| |  || |||||||| ||| | ||||| |||||||| |||||||| || ||||| |||||||||||||| |||||| ||| |  ||||| ||||  || || ||| |||          || | ||   | | | |  | |||| |   |  |    | |    |    |     | ||| |||                   
CTTCAGTACTACTTGAGGAAGAAGGTCTCTTACGAGAAGATTGACCTCGACGTGATTCGTGACGTTGATCTCAACAAGCTCGAGCCATGGGACATACAAGgt-gtgatagatattcagttattcaccactctttc----------atatagcgtgtttggcttcagattcta--gatgtgttttttgatgtttattggagaaagttaatagtt----------------