1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AGAAAGGGATTAGGGTTTTCGTTGTTGGAACTTGGAAACGATGAATGTGATGCGTCGTCTCAAGAGCATTGCTTCTGGTCGATCCTCCGTTTCTGATCCCgtaagttttctgttctttttttttttccctttttatggcctgtttggttggtgagaaaaagccaaaaaaaatgaagtttctggctttttgcagaatggag...
species | Vitis vinifera |
transcript | Vv15s0048g02010.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGCGTCGTCTCAAGAGCATTGCTTCTGGTCGATCCTCCGTTTCTGATCCC GGTGGGGATTCCAGCACAAAGAGGGCAAAGGTTGATCAAGAAGCAGAACAGEST: gi|349828504|gb|FQ417246.1|FQ417246
genomic: TGCGTCGTCTCAAGAGCATTGCTTCTGGTCGATCCTCCGTTTCTGATCCCgtaagttttc ... tttcttttagGGTGGGGATTCCAGCACAAAGAGGGCAAAGGTCGATCAAGAAGCAGAACAG
EST: TGCGTCGTCTCAAGAGCATTGCTTCTGGTCGATCCTCCGTTTCTGATCCC GGTGGGGATTCCAGCACAAAGAGGGCAAAGGTCGATCAAGAAGCAGAACAGEST: gi|351029954|gb|FQ430696.1|FQ430696
genomic: TGCGTCGTCTCAAGAGCATTGCTTCTGGTCGATCCTCCGTTTCTGATCCCgtaagttttc ... tttcttttagGGTGGGGATTCCAGCACAAAGAGGGCAAAGGTCGATCAAGAAGCAGAACAG
EST: TGCGTCGTCTCAAGAGCATTGCTTCTGGTCGATCCTCCGTTTCTGATCCC GGTGGGGATTCCAGCACAAAGAGGGCAAAGGTTGATCAAGAAGCAGAACAGEST: gi|349823414|gb|FQ423225.1|FQ423225
genomic: TGCGTCGTCTCAAGAGCATTGCTTCTGGTCGATCCTCCGTTTCTGATCCCgtaagttttc ... tttcttttagGGTGGGGATTCCAGCACAAAGAGGGCAAAGGTCGATCAAGAAGCAGAACAG
EST: TGCGTCGTCTCAAGAGCATTGCTTCTGGTCGATCCTCCGTTTCTGATCCC GGTGGGGATTCCAGCACAAAGAGGGCAAAGGTCGATCAAGAAGCAGAACAGEST: gi|351015296|gb|FQ445580.1|FQ445580
genomic: TGCGTCGTCTCAAGAGCATTGCTTCTGGTCGATCCTCCGTTTCTGATCCCgtaagttttc ... tttcttttagGGTGGGGATTCCAGCACAAAGAGGGCAAAGGTCGATCAAGAAGCAGAACAG
EST: TGCGTCGTCTCAAGAGCATTGCTTCTGGTCGATCCTCCGTTTCTGATCCC GGTGGGGATTCCAGCACAAAGAGGGCAAAGGTTGATCAAGAAGCAGAACAGEST: gi|351015511|gb|FQ447340.1|FQ447340
genomic: TGCGTCGTCTCAAGAGCATTGCTTCTGGTCGATCCTCCGTTTCTGATCCCgtaagttttc ... tttcttttagGGTGGGGATTCCAGCACAAAGAGGGCAAAGGTCGATCAAGAAGCAGAACAG
EST: TGCGTCGTCTCAAGAGCATTGCTTCTGGTCGATCCTCCGTTTCTGATCCC GGTGGGGATTCCAGCACAAAGAGGGCAAAGGTTGATCAAGAAGCAGAACAGEST: gi|110713030|gb|EE088592.1|EE088592
genomic: TGCGTCGTCTCAAGAGCATTGCTTCTGGTCGATCCTCCGTTTCTGATCCCgtaagttttc ... tttcttttagGGTGGGGATTCCAGCACAAAGAGGGCAAAGGTCGATCAAGAAGCAGAACAG
EST: TGCGTCGTCTCAAGAGCATTGCTTCTGGTCGATCCTCCGTTTCTGATCCC GGTGGGGATTCCAGCACAAAGAGGGCAAAGGTTGATCAAGAAGCAGAACAGEST: gi|352773646|gb|FQ472428.1|FQ472428
genomic: TGCGTCGTCTCAAGAGCATTGCTTCTGGTCGATCCTCCGTTTCTGATCCCgtaagttttc ... tttcttttagGGTGGGGATTCCAGCACAAAGAGGGCAAAGGTCGATCAAGAAGCAGAACAG
EST: TGCGTCGTCTCAAGAGCATTGCTTCTGGTCGATCCTCCGTTTCTGATCCC GGTGGGGATTCCAGCACAAAGAGGGCAAAGGTCGATCAAGAAGCAGAACAGEST: gi|349817714|gb|FQ407703.1|FQ407703
genomic: TGCGTCGTCTCAAGAGCATTGCTTCTGGTCGATCCTCCGTTTCTGATCCCgtaagttttc ... tttcttttagGGTGGGGATTCCAGCACAAAGAGGGCAAAGGTCGATCAAGAAGCAGAACAG
EST: TGCGTCCTCTCCAGAGCATTGCTTCTGGTCGATCCTCCGTTTCTGATCCC GGTGGGGATTCCAGCACAAAGAGGGCAAAGGTCGATCCAGAAGCCGAACAGEST: gi|351027217|gb|FQ444466.1|FQ444466
genomic: TGCGTCGTCTCAAGAGCATTGCTTCTGGTCGATCCTCCGTTTCTGATCCCgtaagttttc ... tttcttttagGGTGGGGATTCCAGCACAAAGAGGGCAAAGGTCGATCAAGAAGCAGAACAG
EST: TGCGTCGTCTCAAGAGCATTGCTTCTGGTCGATCCTCCGTTTCTGATCCC GGTGGGGATTCCAGCACAAAGAGGGCAAAGGTTGATCAAGAAGCAGAACAGEST: gi|351026191|gb|FQ428203.1|FQ428203
genomic: TGCGTCGTCTCAAGAGCATTGCTTCTGGTCGATCCTCCGTTTCTGATCCCgtaagttttc ... tttcttttagGGTGGGGATTCCAGCACAAAGAGGGCAAAGGTCGATCAAGAAGCAGAACAG
EST: TGCGTCGTCTCAAGAGCATTGCTTCTGGTCGATCCTCCGTTTCTGATCCC GGTGGGGATTCCAGCACAAAGAGGGCAAAGGTTGATCAAGAAGCAGAACAGEST: gi|110712065|gb|EE089258.1|EE089258
genomic: TGCGTCGTCTCAAGAGCATTGCTTCTGGTCGATCCTCCGTTTCTGATCCCgtaagttttc ... tttcttttagGGTGGGGATTCCAGCACAAAGAGGGCAAAGGTCGATCAAGAAGCAGAACAG
EST: TGCGTCGTCTCAAGAGCATTGCTTCTGGTCGATCCTCCGTTTCTGATCCC GGTGGGGATTCCAGCACAAAGAGGGCAAAGGTTGATCAAGAAGCAGAACAGEST: gi|351025364|gb|FQ435056.1|FQ435056
genomic: TGCGTCGTCTCAAGAGCATTGCTTCTGGTCGATCCTCCGTTTCTGATCCCgtaagttttc ... tttcttttagGGTGGGGATTCCAGCACAAAGAGGGCAAAGGTCGATCAAGAAGCAGAACAG
EST: TGCGTCGTCTCAAGAGCATTGCTTCTGGTCGATCCTCCGTTTCTGATCCC GGTGGGGATTCCAGCACAAAGAGGGCAAAGGTCGATCAAGAAGCAGAACAGEST: gi|34548045|gb|CF516277.1|CF516277
genomic: TGCGTCGTCTCAAGAGCATTGCTTCTGGTCGATCCTCCGTTTCTGATCCCgtaagttttc ... tttcttttagGGTGGGGATTCCAGCACAAAGAGGGCAAAGGTCGATCAAGAAGCAGAACAG
EST: TGCGTCGTCTCAAGAGCATTGCTTCTGGTCGATCCTCCGTTTCTGATCCC GGTGGGGATTCCAGCACAAAGAGGGCAAAGGTCGATCAAGAAGCAGAACAGEST: gi|351021880|gb|FQ437667.1|FQ437667
genomic: TGCGTCGTCTCAAGAGCATTGCTTCTGGTCGATCCTCCGTTTCTGATCCCgtaagttttc ... tttcttttagGGTGGGGATTCCAGCACAAAGAGGGCAAAGGTCGATCAAGAAGCAGAACAG
EST: TGCGTCGTCTCAAGAGCATTGCTTCTGGTCGATCCTCCGTTTCTGATCCC GGTGGGGATTCCAGCACAAAGAGGGCAAAGGTTGATCAAGAAGCAGAACAG
genomic: TGCGTCGTCTCAAGAGCATTGCTTCTGGTCGATCCTCCGTTTCTGATCCCgtaagttttc ... tttcttttagGGTGGGGATTCCAGCACAAAGAGGGCAAAGGTCGATCAAGAAGCAGAACAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAAAGGGATTAGGGTTTTCGTTGTTGGAACTTGGAAACGATGAATGTGATGCGTCGTCTCAAGAGCATTGCTTCTGGTCGATCCTCCGTTTCTGATCCCgtaagttttctgttctttttttttttccctttttatggcctgtttggttggtgagaaaaagccaaaaaaaatgaagtttctggctttttgcagaatggag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa