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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGGAGGAAGAGTCTGCTAAGAGACAGAGAAGTGCTTAGCTGAGACCTGAGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCGgtactcctccctctctctctctctcttaaatccctttctctacgattctttctctatttctctttttctgcgttttgggaattctttcgaaccctaattt...

Basic information

species Vitis vinifera
transcript Vv15s0048g01890.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110685319|gb|EE063602.1|EE063602
EST:     TCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCG                         TTGAATCCAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
genomic: TCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCGgtactcctcc ... gacttagcagGTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
EST: gi|71855306|gb|DT004361.1|DT004361
EST:     AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCG                         GTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
genomic: AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCGgtactcctcc ... gacttagcagGTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
EST: gi|27585704|gb|CB008399.1|CB008399
EST:     GGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCG                         GTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
genomic: GGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCGgtactcctcc ... gacttagcagGTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
EST: gi|161718258|gb|FC066959.1|FC066959
EST:     AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCG                         GTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
genomic: AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCGgtactcctcc ... gacttagcagGTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
EST: gi|30256397|gb|CB972240.1|CB972240
EST:     AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCG                         GTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
genomic: AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCGgtactcctcc ... gacttagcagGTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
EST: gi|34543960|gb|CF512192.1|CF512192
EST:     AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCGCTCTTTTCG                         GTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
genomic: AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCGgtactcctcc ... gacttagcagGTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
EST: gi|30254158|gb|CB971173.1|CB971173
EST:     AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCG                         GTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
genomic: AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCGgtactcctcc ... gacttagcagGTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
EST: gi|26260326|gb|CA811389.1|CA811389
EST:     GGCAT-ATCTAGGCACTCTTTTCG                         GTGAATTTAGGTTATAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
genomic: GGCATCATCTAGGCACTCTTTTCGgtactcctcc ... gacttagcagGTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
EST: gi|110701786|gb|EE079758.1|EE079758
EST:     AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCG                         GTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
genomic: AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCGgtactcctcc ... gacttagcagGTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
EST: gi|30255822|gb|CB971954.1|CB971954
EST:     AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCG                         GTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
genomic: AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCGgtactcctcc ... gacttagcagGTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
EST: gi|110413573|gb|EC979363.1|EC979363
EST:     AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCG                         GTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
genomic: AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCGgtactcctcc ... gacttagcagGTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
EST: gi|30326206|gb|CD009468.1|CD009468
EST:     CTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCG                         GTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
genomic: CTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCGgtactcctcc ... gacttagcagGTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
EST: gi|32267406|gb|CD716369.1|CD716369
EST:     CTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCG                         GTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
genomic: CTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCGgtactcctcc ... gacttagcagGTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
EST: gi|33408880|gb|CF214507.1|CF214507
EST:     AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCG                         GTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
genomic: AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCGgtactcctcc ... gacttagcagGTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
EST: gi|30128631|gb|CB913970.1|CB913970
EST:     GTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCG                         GTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
genomic: GTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCGgtactcctcc ... gacttagcagGTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
EST: gi|30323004|gb|CD006266.1|CD006266
EST:     CTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCG                         GTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
genomic: CTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCGgtactcctcc ... gacttagcagGTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
EST: gi|18459069|gb|BM437358.1|BM437358
EST:     AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCG                         GTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
genomic: AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCGgtactcctcc ... gacttagcagGTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
EST: gi|32269651|gb|CD718810.1|CD718810
EST:     CTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCG                         GTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
genomic: CTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCGgtactcctcc ... gacttagcagGTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
EST: gi|161716547|gb|FC066220.1|FC066220
EST:     AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCG                         GTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
genomic: AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCGgtactcctcc ... gacttagcagGTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
EST: gi|28961058|gb|CB340537.1|CB340537
EST:     TTCGAGGCATCATCTAGGCACTCTTTTCG                         GTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
genomic: TTCGAGGCATCATCTAGGCACTCTTTTCGgtactcctcc ... gacttagcagGTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
EST: gi|18458719|gb|BM436997.1|BM436997
EST:     GGCATCATCTAGGCACTCTTTTCG                         GTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
genomic: GGCATCATCTAGGCACTCTTTTCGgtactcctcc ... gacttagcagGTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
EST: gi|71879185|gb|DT028240.1|DT028240
EST:     AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCG                         GTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
genomic: AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCGgtactcctcc ... gacttagcagGTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
EST: gi|37190433|gb|CF609782.1|CF609782
EST:     AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCG                         GTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
genomic: AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCGgtactcctcc ... gacttagcagGTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
EST: gi|26257001|gb|CA808064.1|CA808064
EST:     AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCG                         GTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
genomic: AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCGgtactcctcc ... gacttagcagGTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
EST: gi|156735526|gb|EV239647.1|EV239647
EST:     AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCTTCTAGGCACTCTTTTCG                         GTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
genomic: AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCGgtactcctcc ... gacttagcagGTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
EST: gi|34544048|gb|CF512280.1|CF512280
EST:     AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCGCTCTTTTCG                         GTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
genomic: AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCGgtactcctcc ... gacttagcagGTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
EST: gi|110687531|gb|EE065043.1|EE065043
EST:     AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCG                         GTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
genomic: AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCGgtactcctcc ... gacttagcagGTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
EST: gi|161718317|gb|FC067266.1|FC067266
EST:     AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCG                         GTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
genomic: AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCGgtactcctcc ... gacttagcagGTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
EST: gi|26257202|gb|CA808265.1|CA808265
EST:     AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCG                         GTGAATCTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
genomic: AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCGgtactcctcc ... gacttagcagGTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
EST: gi|71856241|gb|DT005296.1|DT005296
EST:     AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCG                         GTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
genomic: AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCGgtactcctcc ... gacttagcagGTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
EST: gi|71856891|gb|DT005946.1|DT005946
EST:     AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCG                         GTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
genomic: AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCGgtactcctcc ... gacttagcagGTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
EST: gi|32265320|gb|CD716909.1|CD716909
EST:     CTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCG                         GTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
genomic: CTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCGgtactcctcc ... gacttagcagGTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
EST: gi|161711302|gb|FC059099.1|FC059099
EST:     AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCG                         GTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
genomic: AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCGgtactcctcc ... gacttagcagGTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
EST: gi|71855655|gb|DT004710.1|DT004710
EST:     AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCG                         GTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
genomic: AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCGgtactcctcc ... gacttagcagGTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
EST: gi|294964069|gb|GW837872.1|GW837872
EST:     AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCG                         GTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
genomic: AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCGgtactcctcc ... gacttagcagGTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
EST: gi|29784482|gb|CB345278.2|CB345278
EST:     TCATCTAGGCACTCGATTTCG                         GTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACT
genomic: TCATCTAGGCACTC-TTTTCGgtactcctcc ... gacttagcagGTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACT
EST: gi|30131945|gb|CB917284.1|CB917284
EST:     TCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGTACTCTTTTCG                         GTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
genomic: TCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCGgtactcctcc ... gacttagcagGTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
EST: gi|110730254|gb|EE107122.1|EE107122
EST:     TGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCG                         GTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
genomic: TGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCGgtactcctcc ... gacttagcagGTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
EST: gi|71859218|gb|DT008273.1|DT008273
EST:     AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCG                         GTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
genomic: AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCGgtactcctcc ... gacttagcagGTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
EST: gi|26264426|gb|CA815489.1|CA815489
EST:     AGGCTCTCTCTGGTCGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCG                         GTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
genomic: AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCGgtactcctcc ... gacttagcagGTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
EST: gi|110699462|gb|EE076482.1|EE076482
EST:     CTCTGGTTGTGGCTTTCGAGGCATCATCTCGGCACTCTTTTCG                         GTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
genomic: CTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCGgtactcctcc ... gacttagcagGTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
EST: gi|110694713|gb|EE072070.1|EE072070
EST:     AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCG                         GTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
genomic: AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCGgtactcctcc ... gacttagcagGTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
EST: gi|26262332|gb|CA813395.1|CA813395
EST:     TGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCG                         GTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
genomic: AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCGgtactcctcc ... gacttagcagGTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
EST: gi|32272185|gb|CD721344.1|CD721344
EST:     CTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCG                         GTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
genomic: CTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCGgtactcctcc ... gacttagcagGTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
EST: gi|27583486|gb|CB006181.1|CB006181
EST:     GGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCG                         GTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
genomic: GGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCGgtactcctcc ... gacttagcagGTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
EST: gi|77583842|gb|DV220955.1|DV220955
EST:     GGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCG                         GTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
genomic: GGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCGgtactcctcc ... gacttagcagGTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
EST: gi|30129202|gb|CB914541.1|CB914541
EST:     AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCG                         GTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
genomic: AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCGgtactcctcc ... gacttagcagGTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
EST: gi|161720374|gb|FC069835.1|FC069835
EST:     GTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCG                         GTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
genomic: GTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCGgtactcctcc ... gacttagcagGTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
EST: gi|110702542|gb|EE081378.1|EE081378
EST:     AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCG                         GTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
genomic: AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCGgtactcctcc ... gacttagcagGTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
EST: gi|30132633|gb|CB917972.1|CB917972
EST:     AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCG                         GTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
genomic: AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCGgtactcctcc ... gacttagcagGTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
EST: gi|161721235|gb|FC070741.1|FC070741
EST:     AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCG                         GTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
genomic: AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCGgtactcctcc ... gacttagcagGTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
EST: gi|30133319|gb|CB918658.1|CB918658
EST:     AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCG                         GTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
genomic: AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCGgtactcctcc ... gacttagcagGTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
EST: gi|30321490|gb|CD004752.1|CD004752
EST:     AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCG                         GTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC
genomic: AGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCGgtactcctcc ... gacttagcagGTGAATTTAGGTTAAAAGATGAGTACTCTGGATGCAACTCGAGCAGAACTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAAGGAGGAAGAGTCTGCTAAGAGACAGAGAAGTGCTTAGCTGAGACCTGAGGCTCTCTCTGGTTGTGGCTTTCGAGGCATCATCTAGGCACTCTTTTCGgtactcctccctctctctctctctcttaaatccctttctctacgattctttctctatttctctttttctgcgttttgggaattctttcgaaccctaattt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctttc