1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGCTCAAGAAGGCCTATGAACTTTCTGTGCTTTGTGATGCTGAGGTTGCTCTCATCATCTTCTCTAGCCGCGGCAAGCTCTATGAGTTTGGCAGTGCTGGgtatacacgcacatatatatatatgcttttctccctcctttcctctctttctttctctttatatacatagagatattgatatatgcagtaaatggagtat...
species | Vitis vinifera |
transcript | Vv15s0048g01270.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTCATCATCTTCTCTAGCCGCGGCAAGCTCTATGAGTTTGGCAGTGCTGG TACTACCAAAACCCTAGAGCGGTATCAACGTGTCTGCTACACTCCTCAAGAEST: gi|71868273|gb|DT017328.1|DT017328
genomic: CTCATCATCTTCTCTAGCCGCGGCAAGCTCTATGAGTTTGGCAGTGCTGGgtatacacgc ... atttttgcagTACTACCAAAACCCTAGAGCGGTATCAACGCGTCTGCTACACTCCTCAAGA
EST: CTCATCATCTTCTCTAGCCGCGGCAAGCTCTATGAGTTTGGCAGTGCTGG TACTACCAAAACCCTAGAGCGGTATCAACGCGTCTGCTACACTCCTCAAGAEST: gi|110689144|gb|EE065109.1|EE065109
genomic: CTCATCATCTTCTCTAGCCGCGGCAAGCTCTATGAGTTTGGCAGTGCTGGgtatacacgc ... atttttgcagTACTACCAAAACCCTAGAGCGGTATCAACGCGTCTGCTACACTCCTCAAGA
EST: CTCATCATCTTCTCTAGCCGCGGCAAGCTCTATGAGTTTGGCAGTGCTGG TACTACCAAAACCCTAGAGCGGTATCAACGCGTCTGCTACACTCCTCAAGA
genomic: CTCATCATCTTCTCTAGCCGCGGCAAGCTCTATGAGTTTGGCAGTGCTGGgtatacacgc ... atttttgcagTACTACCAAAACCCTAGAGCGGTATCAACGCGTCTGCTACACTCCTCAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTCAAGAAGGCCTATGAACTTTCTGTGCTTTGTGATGCTGAGGTTGCTCTCATCATCTTCTCTAGCCGCGGCAAGCTCTATGAGTTTGGCAGTGCTGGgtatacacgcacatatatatatatgcttttctccctcctttcctctctttctttctctttatatacatagagatattgatatatgcagtaaatggagtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agagata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatgga