Sequence
atgc intronic sequence ATGC exonic sequenceAGGATCCGAATAAGAAGATCCGGAAGCCCTACACCATCACCAAGTCCAGGGAGAGCTGGACCGAGCAAGAGCACGATAAGTTTCTCGAAGCTTTACAACTgtacgtcgctctcgattacttgattttggggttctgtttagtcggtgagaagattcagggggggggggggggaaaannnnnnnnnnnnnnnnnnnnnnnn...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0046g02260.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA16G03640.1 (Glycine max), 5'ss of exon 1
AGGATCCGAATAAGAAGATCCGGAAGCCCTACACCATCACCAAGTCCAGGGAGAGCTGGACCGAGCAAGAGCACGATAAGTTTCTCGAAGCTTTACAACTgtacgtcgctctcgat--tacttgattttggggttctgtttagtcggtgagaagattcagggggggggggggggaaaannnnnnnnnnnnnnnnnnnnnnnn
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AGGATCCGAATAAGAAGATCCGGAAACCCTACACGATTACCAAGTCCAGGGAGAGCTGGACCGAGCAGGAGCACGACAAGTTTCTAGAAGCTCTCCAATTgtgagtccctttttttcttaattcatttttatattatgctttgtttttcatggaattgaaattcatgtggtgtgaattaggctccggctgttttaatttt--
upper sequence: Vv15s0046g02260.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA07G07200.1 (Glycine max), 5'ss of exon 1
AGGATCCGAATAAGAAGATCCGGAAGCCCTACACCATCACCAAGTCCAGGGAGAGCTGGACCGAGCAAGAGCACGATAAGTTTCTCGAAGCTTTACAACTgtacgtcgctctcgattacttgattttggggttctgtttagtcggtgagaagattcagggggggggggggggaaaannnnnnnnnnnnnnnnnnnnnnnn--
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AGGATCCGAGTAAGAAGATCAGGAAACCCTACACGATTACCAAGTCCAGGGAGAGCTGGACTGAGCAGGAGCACGACAAGTTTCTAGAAGCTCTCCAATTgtgagtc-ctttttagaatttagttttatattttt-ttcactgaattcaaatccatgtgctgtgaattaggcactggcaagggattggaggactggtgactg
upper sequence: Vv15s0046g02260.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA18G47230.1 (Glycine max), 5'ss of exon 1
AGGATCCGAATAAGAAGATCCGGAAGCCCTACACCATCACCAAGTCCAGGGAGAGCTGGACCGAGCAAGAGCACGATAAGTTTCTCGAAGCTTTACAACTgtacgtcgctctcgattacttgattt-tggggttctgtttagtcggtgagaagattcagggggggggggggggaaaannnnnnnnnnnnnnnnnnnnnnnn
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AGGATCAGAATAAGAAGGTCCGAAAACCTTACACCATTACCAAGTCCAGAGAGAACTGGACCGACCAGGAGCATGACAAGTTTCTCGAAGCTCTTCACTTgtatgtcttctttctttttatgattcattcagtttggtgaagtttccttttttgctcttaagtttcaattttgtttcatacaatttaagacttgtttcag-
upper sequence: Vv15s0046g02260.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: PP1S160_6V6.1 (Physcomitrella patens), 5'ss of exon 2
-AGGATCCGAATAAGAAGATCCGGAAGCCCTACACCATCACCAAGTCCAGGGAGAGCTGGACCGAGCAAGAGCACGATAAGTTTCTCGAAGCTTTACAACTgtacgtcgctct-cgattacttgattttggggttctgtttagtcggtgagaagattcagggggggggggggggaaaannnnnnnnnnnnnnnnnnnnnnnn-
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AAGAAGGCTCA-AAAAAAATTCGGAAACCTTACACCATCACTAAGTCCAGAGAAAGCTGGACTGAGCAGGAGCATGATAAGTTTCTCGAGGCCCTACAATTgtgagtgtttcttccccttcatgatttgatgaagttttgtattt--tgggactagccaaacagtgactatcttcagttcttacctactacgtctttgaagtt
upper sequence: Vv15s0046g02260.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: PP1S46_272V6.1 (Physcomitrella patens), 5'ss of exon 1
AGGATCCGAATAAGAAGATCCGGAAGCCCTACACCATCACCAAGTCCAGGGAGAGCTGGACCGAGCAAGAGCACGATAAGTTTCTCGAAGCTTTACAACTgtacgtcgctctcgattacttgattttggg-gttctgtttagtcggtgagaagattcagggggggggggggggaaaannnnnnnnnnnnnnnnnnnnnnnn--
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AAGAGGGCTCTAAAAAGATTAGAAAGCCTTACACCATCACCAAGTCGAGGGAAAGCTGGACTGAGCAGGAGCACGATAAATTTCTTGAGGCCTTACAACTgtgagcgtttcttac---ctcgataccagttatttcagtctgttaccaacggactagccgagtctataacatcttaacttcctaccttctagatcttcgaagt
upper sequence: Vv15s0046g02260.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: PP1S198_135V6.1 (Physcomitrella patens), 5'ss of exon 2
AGGATCCGAATAAGAAGATCCGGAAGCCCTACACCATCACCAAGTCCAGGGAGAGCTGGACCGAGCAAGAGCACGATAAGTTTCTCGAAGCTTTACAACTgtacgtcgctctcgattacttgattttggggttctg-tttagtcggtgagaag-attcagggggggggggggggaaaannnnnnnnnnnnnnnnnnnnnnnn
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AAGAAGGTTCCAAAAAAATACGAAAACCTTACACCATCACTAAGTCGAGGGAAAGCTGGACTGAGCAGGAACACGATAAATTTCTCGATGCGCTGCAACTgtgagtgtttctgttccattttgttattgtccagggatttcatacatgctcggtattctgcatgagtagtgaagcttgttattgctcagagccttgagga--
upper sequence: Vv15s0046g02260.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: EFJ36434 (Selaginella moellendorffii), 5'ss of exon 1
AGGATCCGAATAAGAAGATCCGGAAGCCCTACACCATCACCAAGTCCAGGGAGAGCTGGACCGAGCAAGAGCACGATAAGTTTCTCGAAGCTTTACAACTgtacgtcg-ctctcgattacttgattttggggttctgtttagtcggtgagaagattcagggggggggggggggaaaannnnnnnnnnnnnnnnnnnnnnnn
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ATGCGGTGTCCAAGAAGATCCGGAAGCCCTACACCATCACGAAATCCAGGGAGAGCTGGACGGAGCAAGAGCACGACAAGTTTCTCGAGGCCTTGCAGCTgtaagagatcttttcctcgcgaggtatcggttctaagtccaatctctccag--------------------------------------------------
upper sequence: Vv15s0046g02260.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: EFJ37776 (Selaginella moellendorffii), 5'ss of exon 1
AGGATCCGAATAAGAAGATCCGGAAGCCCTACACCATCACCAAGTCCAGGGAGAGCTGGACCGAGCAAGAGCACGATAAGTTTCTCGAAGCTTTACAACTgtacgtcgctctcgattacttga----ttttggggttctgtttagtcggtgagaagattcagggggggggggggggaaaannnnnnnnnnnnnnnnnnnnnnnn
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--GATGCCGCCAGGAAGATCCGCAAGCCCTACACCATCACCAAGTCGCGCGAGAACTGGGCGGATGAAGAGCACGACAAATTCCTCGAGGCGCTGCATCTgtgagttcttcctctcttctttacagttctcgatattttgcttctccgcgtag---------------------------------------------------
upper sequence: Vv15s0046g02260.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: EFJ32076 (Selaginella moellendorffii), 5'ss of exon 1
AGGATCCGAATAAGAAGATCCGGAAGCCCTACACCATCACCAAGTCCAGGGAGAGCTGGACCGAGCAAGAGCACGATAAGTTTCTCGAAGCTTTACAACTgtacgtcgctctcgattac----ttgattttggggttctgtttagtcggtgagaagattcagggggggggggggggaaaannnnnnnnnnnnnnnnnnnnnnnn
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--------------AAGATCCGCAAGCCCTACACCATCACCAAGTCGCGCGAGAACTGGGCGGATGAAGAGCACGACAAATTCCTCGAGGCGCTTCATCTgtgagttcttctttttctcagcacagttctcgatgttttacttctccgcgtag---------------------------------------------------
upper sequence: Vv15s0046g02260.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: EFJ04991 (Selaginella moellendorffii), 5'ss of exon 1
AGGATCCGAATAAGAAGATCCGGAAGCCCTACACCATCACCAAGTCCAGGGAGAGCTGGACCGAGCAAGAGCACGATAAGTTTCTCGAAGCTTTACAACTgtacgtcg-ctctcgattacttgattttggggttctgtttagtcggtgagaagattcagggggggggggggggaaaannnnnnnnnnnnnnnnnnnnnnnn
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ATGCGGTGTCCAAGAAGATCCGGAAGCCCTACACCATCACGAAATCCAGGGAGAGCTGGACGGAGCAAGAGCACGACAAGTTTCTCGAGGCCTTGCAGCTgtaagagatcttttccccgcgaggtattgattctaagtccaatctctccag--------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122690730|gb|EC957082.1|EC957082EST: GAGAGCTGGACCGAGCAAGAGCACGATAAGTTTCTCGAAGCTTTACAACT TTTTGATCGAGATTGGAAGAAGATCGAAGCATTTGTTGGGTCCAAAACAGT
genomic: GAGAGCTGGACCGAGCAAGAGCACGATAAGTTTCTCGAAGCTTTACAACTgtacgtcgct ... ttatccatagTTTTGATCGAGATTGGAAGAAGATCGAAGCATTTGTTGGGTCCAAAACAGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGGATCCGAATAAGAAGATCCGGAAGCCCTACACCATCACCAAGTCCAGGGAGAGCTGGACCGAGCAAGAGCACGATAAGTTTCTCGAAGCTTTACAACTgtacgtcgctctcgattacttgattttggggttctgtttagtcggtgagaagattcagggggggggggggggaaaannnnnnnnnnnnnnnnnnnnnnnn
- - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggggggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggaaaa