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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATGCCACCCTTTATACCGTCAATCAGAAATGGCCTGGCCATGCTGTTCTGGTTCCGCCAGCCCCTGACGCCCAAACTGCCCATAAGTTTGGTTCTATGgtatataacattgtcatttgcttttgatttttcttgtgatatatagttcaagggttcgttgtttatggcattcttgttcatgggctaagactaggtgttg...

Basic information

species Vitis vinifera
transcript Vv15s0046g01630.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351029945|gb|FQ427785.1|FQ427785
EST:     TGGTTCCGCCAGCCCCTGACGCCCAAACTGCCCATAAGTTTGGTTCTATG                         GGGTTCTTCAATTTTACTTCCCGAAGGCCTCGCCATCTACTGAATATTTTG
genomic: TGGTTCCGCCAGCCCCTGACGCCCAAACTGCCCATAAGTTTGGTTCTATGgtatataaca ... cattgtacagGGGTTCTTCAATTTTACTTCCCGAAGGCCTCGCCATCTGCTGAATATTTTG
EST: gi|352786171|gb|FQ478782.1|FQ478782
EST:     TGGTTCCGCCAGCCCCTGACGCCCAAACTGCCCATAAGTTTGGTTCTATG                         GGGTTCTTCAATTTTACTTCCCGAAGGCCTCGCCATCTACTGAATATTTTG
genomic: TGGTTCCGCCAGCCCCTGACGCCCAAACTGCCCATAAGTTTGGTTCTATGgtatataaca ... cattgtacagGGGTTCTTCAATTTTACTTCCCGAAGGCCTCGCCATCTGCTGAATATTTTG
EST: gi|351038208|gb|FQ460900.1|FQ460900
EST:     TGGTTCCGCCAGCCCCTGACGCCCAAACTGCCCATAAGTTTGGTTCTATG                         GGGTTCTTCAATTTTACTTCCCGAAGGCCTCGCCATCTACTGAATATTTTG
genomic: TGGTTCCGCCAGCCCCTGACGCCCAAACTGCCCATAAGTTTGGTTCTATGgtatataaca ... cattgtacagGGGTTCTTCAATTTTACTTCCCGAAGGCCTCGCCATCTGCTGAATATTTTG
EST: gi|351056219|gb|FQ453681.1|FQ453681
EST:     TGGTTCCGCCAGCCCCTGACGCCCAAACTGCCCATAAGTTTGGTTCTATG                         GGGTTCTTCAATTTTACTTCTCGAAGGCCTCGCCATCTACTGAATATTTTG
genomic: TGGTTCCGCCAGCCCCTGACGCCCAAACTGCCCATAAGTTTGGTTCTATGgtatataaca ... cattgtacagGGGTTCTTCAATTTTACTTCCCGAAGGCCTCGCCATCTGCTGAATATTTTG
EST: gi|161715714|gb|FC066821.1|FC066821
EST:     TGGTTCCGCCAGCCCCTGACGCCCAAACTGCCCATAAGTTTGGTTCTATG                         GGGTTCTTCAATTTTACTTCCCGAAGGCCTCGCCATCTGCTGAATATTTTG
genomic: TGGTTCCGCCAGCCCCTGACGCCCAAACTGCCCATAAGTTTGGTTCTATGgtatataaca ... cattgtacagGGGTTCTTCAATTTTACTTCCCGAAGGCCTCGCCATCTGCTGAATATTTTG
EST: gi|351012109|gb|FQ429915.1|FQ429915
EST:     TGGTTCCGCCAGCCCCTGACGCCCAAACTGCCCATAAGTTTGGTTCTATG                         GGGTTCTTCAATTTTACTTCCCGAAGGCCTCGCCATCTACTGAATATTTTG
genomic: TGGTTCCGCCAGCCCCTGACGCCCAAACTGCCCATAAGTTTGGTTCTATGgtatataaca ... cattgtacagGGGTTCTTCAATTTTACTTCCCGAAGGCCTCGCCATCTGCTGAATATTTTG