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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTGGAGGCATCGGTGAGGGAGGCGATGGGCGGATTTGGGAAGCGGAAGGGCGGGGAGGTGGCGACCTCAGCTTCTGATGCAAAAAGATTGAAGATTTGgtaagatctctaattcgacagggttttgatttgaattaattataacaacgtttggttgctgagaaaattggggaataatggaaaataaagggcctgtttg...

Basic information

species Vitis vinifera
transcript Vv15s0046g00940.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161719869|gb|FC066117.1|FC066117
EST:     GGCGGGGAGGTGGCGACCTCAGCTTCTGATGCAAAAAGATTGAAGATTTG                         GATGGGAAAGAAAAA-TTAGAGGAAAGTGACAGCGATGAAGATGATGCAGA
genomic: GGCGGGGAGGTGGCGACCTCAGCTTCTGATGCAAAAAGATTGAAGATTTGgtaagatctc ... gttttattagGATGGGAAAGAAAAAATTAGAGGAAAGTGACAGCGATGAAGATGATGCAGA
EST: gi|110723125|gb|EE100083.1|EE100083
EST:     GGTGCGGAGGTGGCGACCTCAGCTTCTGATGCAAAAAGATTGAAGATTTG                         GATGGGAAAGAAAAAATTAGAGGAAAGTGACAGCGATGAAGATGATGCAGA
genomic: GGCGGGGAGGTGGCGACCTCAGCTTCTGATGCAAAAAGATTGAAGATTTGgtaagatctc ... gttttattagGATGGGAAAGAAAAAATTAGAGGAAAGTGACAGCGATGAAGATGATGCAGA
EST: gi|349807951|gb|FQ402342.1|FQ402342
EST:     GGCGGGGAGGTGGCGACCTCAGCTTCTGATGCAAAAAGATTGAAGATTTG                         GATGGGAAAGAAAAAATTAGAGGAAAGTGACAGCGATGAAGATGATGCAGA
genomic: GGCGGGGAGGTGGCGACCTCAGCTTCTGATGCAAAAAGATTGAAGATTTGgtaagatctc ... gttttattagGATGGGAAAGAAAAAATTAGAGGAAAGTGACAGCGATGAAGATGATGCAGA
EST: gi|71882150|gb|DT031205.1|DT031205
EST:     AAAAGATTGAAGATTTG                         GATGGGAAAGAAAAAATTAGAGGAAAGTGACAGCGATGAAGATGATGCAGA
genomic: AAAAGATTGAAGATTTGgtaagatctc ... gttttattagGATGGGAAAGAAAAAATTAGAGGAAAGTGACAGCGATGAAGATGATGCAGA
EST: gi|110391385|gb|EC956356.1|EC956356
EST:     GGCGGGGAGGTGGCGACCTCAGCTTCTGATGCAAAAAGATTGAAGATTTG                         GATGGGAAAGAAAAAATTAGAGGAAAGTGACAGCGATGAAGATGATGCAGA
genomic: GGCGGGGAGGTGGCGACCTCAGCTTCTGATGCAAAAAGATTGAAGATTTGgtaagatctc ... gttttattagGATGGGAAAGAAAAAATTAGAGGAAAGTGACAGCGATGAAGATGATGCAGA
EST: gi|349816429|gb|FQ403804.1|FQ403804
EST:     GGCGGGGAGGTGGCGACCTCAGCTTCTGATGCAAAAAGATTGAAAATTTG                         GATGGGAAAGAAAAAATTAGAGGAAAGTGACAGCGATGAAGATGATGCAGA
genomic: GGCGGGGAGGTGGCGACCTCAGCTTCTGATGCAAAAAGATTGAAGATTTGgtaagatctc ... gttttattagGATGGGAAAGAAAAAATTAGAGGAAAGTGACAGCGATGAAGATGATGCAGA
EST: gi|349816458|gb|FQ403833.1|FQ403833
EST:     GGCGGGGAGGTGGCGACCTCAGCTTCTGATGCAAAAAGATTGAAGATTTG                         GATGGGAAAGAAAAAATTAGAGGAAAGTGACAGCGATGAAGATGATGCAGA
genomic: GGCGGGGAGGTGGCGACCTCAGCTTCTGATGCAAAAAGATTGAAGATTTGgtaagatctc ... gttttattagGATGGGAAAGAAAAAATTAGAGGAAAGTGACAGCGATGAAGATGATGCAGA
EST: gi|34547178|gb|CF515410.1|CF515410
EST:     GCGACCTCAGCTTCTGATGCAAAAAGATTGAAGATTTG                         GATGGGAAAGAAAAAATTAGAGGAAAGTGACAGCGATGAAGATGATGCAGA
genomic: GCGACCTCAGCTTCTGATGCAAAAAGATTGAAGATTTGgtaagatctc ... gttttattagGATGGGAAAGAAAAAATTAGAGGAAAGTGACAGCGATGAAGATGATGCAGA
EST: gi|71877460|gb|DT026515.1|DT026515
EST:     GGCGGGGAGGTGGCGACCTCAGCTTCTGATGCAAAAAGATTGAAGATTTG                         GATGGGAAAGAAAAAATTAGAGGAAAGTGACAGCGATGAAGATGATGCAGA
genomic: GGCGGGGAGGTGGCGACCTCAGCTTCTGATGCAAAAAGATTGAAGATTTGgtaagatctc ... gttttattagGATGGGAAAGAAAAAATTAGAGGAAAGTGACAGCGATGAAGATGATGCAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGGTGGAGGCATCGGTGAGGGAGGCGATGGGCGGATTTGGGAAGCGGAAGGGCGGGGAGGTGGCGACCTCAGCTTCTGATGCAAAAAGATTGAAGATTTGgtaagatctctaattcgacagggttttgatttgaattaattataacaacgtttggttgctgagaaaattggggaataatggaaaataaagggcctgtttg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataacaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaataa