1 5' 3' |
TTCATTGAAACCCACTTCGCTCTCATGGTCTTCTTCATTTCCCAATATCAACATTTTTACCAATTCAATCACAAACCCTTCTCTTCCTTCTCTCAACAAGgtattctccttttggttttttttttctcttgtattgctttccattaagcatattttgcaagaatttaggaattgttcaaaacacaattcatattttgcat...
species | Vitis vinifera |
transcript | Vv15s0045g01340.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACATTTCTACCAATTCAATCACAAACCCTTCTCTTCCTTCTCTCAACAAG TGTTTAGTGGTTCAAGCTGCCTGGACCCGGAGATCTCGAAGTGAAGCCGCAEST: gi|37187770|gb|CF607123.1|CF607123
genomic: ACATTTTTACCAATTCAATCACAAACCCTTCTCTTCCTTCTCTCAACAAGgtattctcct ... tgttatgtagTGTTTAGTGGTTCAAGCTGCCTGGACCCGGAGATCTCGAAGTGAAGCCGCA
EST: ACATTTTTACCAATTCAATCACAAACCCTTCTCTTCCTTCTCTCAACAAG TGTTTAGTGGTTCAAGCTGCCTGGACCCGGAGATCTCGAAGTGAAGCCGCAEST: gi|32268737|gb|CD717896.1|CD717896
genomic: ACATTTTTACCAATTCAATCACAAACCCTTCTCTTCCTTCTCTCAACAAGgtattctcct ... tgttatgtagTGTTTAGTGGTTCAAGCTGCCTGGACCCGGAGATCTCGAAGTGAAGCCGCA
EST: ATTTTTACCAATTCAATCACAAACCCTTCTCTTCCTTCTCTCAACAAG TGTTTAGTGGTTCAAGCTGCCTGGACCCGGAGATCTCGAAGTGAAGCCGCA
genomic: ATTTTTACCAATTCAATCACAAACCCTTCTCTTCCTTCTCTCAACAAGgtattctcct ... tgttatgtagTGTTTAGTGGTTCAAGCTGCCTGGACCCGGAGATCTCGAAGTGAAGCCGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCATTGAAACCCACTTCGCTCTCATGGTCTTCTTCATTTCCCAATATCAACATTTTTACCAATTCAATCACAAACCCTTCTCTTCCTTCTCTCAACAAGgtattctccttttggttttttttttctcttgtattgctttccattaagcatattttgcaagaatttaggaattgttcaaaacacaattcatattttgcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaaaca