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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAACGCTGCGTTTTGGAGATTAGGTTTTTGAATTACTCGGCGGTCAACAAGTACTCCTCGTTAGTCTTTGTCTTTTCACTCGGTTTCATGCTGCCATAGgtgagtttctcttccgtcactgtggaaaaaggagagccttttaacaccgagatagagatatatgtgtgtatgtatatatatatataaaggccaaaccgttttgcattattgtcttaggttttctccaactctcagctctcagctctctactctctactctctcttggttgtgcttcag

Basic information

species Vitis vinifera
transcript Vv15s0021g02300.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71868977|gb|DT018032.1|DT018032
EST:     AGTACTCCTCGTTCGTCTTTGTCTTTTCACTCGGTTTCATGCTGCCATAG                         ATCGAGTTGAGGGCCTTTGGAACAACGTCGTCAAACCTGAGCTTCAGTGGG
genomic: AGTACTCCTCGTTAGTCTTTGTCTTTTCACTCGGTTTCATGCTGCCATAGgtgagtttct ... tgtgcttcagATCGAGTTGAGGGCCTTTGGAACAACGTCGTCAAACCTGAGCTTCAGTGGG
EST: gi|351034276|gb|FQ448073.1|FQ448073
EST:     AGTACTCCTCGTTCGTCTTTGTCTTTTCACTCGGTTTCATGCTGCCATAG                         ATCGAGTTGAGGGCCTTTGGAACAACGTCGTCAAACCTGAGCTTCAGTGGG
genomic: AGTACTCCTCGTTAGTCTTTGTCTTTTCACTCGGTTTCATGCTGCCATAGgtgagtttct ... tgtgcttcagATCGAGTTGAGGGCCTTTGGAACAACGTCGTCAAACCTGAGCTTCAGTGGG
EST: gi|352798778|gb|FQ478413.1|FQ478413
EST:     AGTACTCCTCGTTCGTCTTTGTCTTTTCACTCGGTTTCATGCTGCCATAG                         ATCGAGTTGAGGGCCTTTGGAACAACGTCGTCAAACCTGAGCTTCAGTGGG
genomic: AGTACTCCTCGTTAGTCTTTGTCTTTTCACTCGGTTTCATGCTGCCATAGgtgagtttct ... tgtgcttcagATCGAGTTGAGGGCCTTTGGAACAACGTCGTCAAACCTGAGCTTCAGTGGG
EST: gi|71877182|gb|DT026237.1|DT026237
EST:     AGTACTCCTCGTTCGTCTTTGTCTTTTCACTCGGTTTCATGCTGCCATAG                         ATCGAGTTGAGGGCCTTTGGAACAACGTCGTCAAACCTGAGCTTCAGTGGG
genomic: AGTACTCCTCGTTAGTCTTTGTCTTTTCACTCGGTTTCATGCTGCCATAGgtgagtttct ... tgtgcttcagATCGAGTTGAGGGCCTTTGGAACAACGTCGTCAAACCTGAGCTTCAGTGGG
EST: gi|110693740|gb|EE070236.1|EE070236
EST:     AGTACTCCTCGTTCGTCTTTGTCTTTTCACTCGGTTTCATGCTGCCATAG                         ATCGAGTTGAGGGCCTTTGGAACAACGTCGTCAAACCTGAGCTTCAGTGGG
genomic: AGTACTCCTCGTTAGTCTTTGTCTTTTCACTCGGTTTCATGCTGCCATAGgtgagtttct ... tgtgcttcagATCGAGTTGAGGGCCTTTGGAACAACGTCGTCAAACCTGAGCTTCAGTGGG
EST: gi|71876487|gb|DT025542.1|DT025542
EST:     AGTACTCCTCGTTCGTCTTTGTCTTTTCACTCGGTTTCATGCTGCCATAG                         ATCGAGTTGAGGGCCTTTGGAACAACGTCGTCAAACCTGAGCTTCAGTGGG
genomic: AGTACTCCTCGTTAGTCTTTGTCTTTTCACTCGGTTTCATGCTGCCATAGgtgagtttct ... tgtgcttcagATCGAGTTGAGGGCCTTTGGAACAACGTCGTCAAACCTGAGCTTCAGTGGG
EST: gi|110684597|gb|EE062056.1|EE062056
EST:     AGTACTCCTCGTTCGTCTTTGTCTTTTCACTCGGTTTCATGCTGCCATAG                         ATCGAGTTGAGGGCCTTTGGAACAACGTCGTCAAACCTGAGCTTCAGTGGG
genomic: AGTACTCCTCGTTAGTCTTTGTCTTTTCACTCGGTTTCATGCTGCCATAGgtgagtttct ... tgtgcttcagATCGAGTTGAGGGCCTTTGGAACAACGTCGTCAAACCTGAGCTTCAGTGGG
EST: gi|351037488|gb|FQ460687.1|FQ460687
EST:     AGTACTCCTCGTTCGTCTTTGTCTTTTCACTCGGTTTCATGCTGCCATAG                         ATCGAGTTGAGGGCCTTTGGAACAACGTCGTCAAACCTGAGCTTCAGTGGG
genomic: AGTACTCCTCGTTAGTCTTTGTCTTTTCACTCGGTTTCATGCTGCCATAGgtgagtttct ... tgtgcttcagATCGAGTTGAGGGCCTTTGGAACAACGTCGTCAAACCTGAGCTTCAGTGGG
EST: gi|71870483|gb|DT019538.1|DT019538
EST:     AGTACTCCTCGTTCGTCTTTGTCTTTTCACTCGGTTTCATGCTGCCATAG                         ATCGAGTTGAGGGCCTTTGGAACAACGTCGTCAAACCTGAGCTTCAGTGGG
genomic: AGTACTCCTCGTTAGTCTTTGTCTTTTCACTCGGTTTCATGCTGCCATAGgtgagtttct ... tgtgcttcagATCGAGTTGAGGGCCTTTGGAACAACGTCGTCAAACCTGAGCTTCAGTGGG
EST: gi|71867687|gb|DT016742.1|DT016742
EST:     AGTACTCCTCGTTCGTCTTTGTCTTTTCACTCGGTTTCATGCTGCCATAG                         ATCGAGTTGAGGGCCTTTGGAACAACGTCGTCAAACCTGAGCTTCAGTGGG
genomic: AGTACTCCTCGTTAGTCTTTGTCTTTTCACTCGGTTTCATGCTGCCATAGgtgagtttct ... tgtgcttcagATCGAGTTGAGGGCCTTTGGAACAACGTCGTCAAACCTGAGCTTCAGTGGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAACGCTGCGTTTTGGAGATTAGGTTTTTGAATTACTCGGCGGTCAACAAGTACTCCTCGTTAGTCTTTGTCTTTTCACTCGGTTTCATGCTGCCATAGgtgagtttctcttccgtcactgtggaaaaaggagagccttttaacaccgagatagagatatatgtgtgtatgtatatatatatataaaggccaaaccgttttgcattattgtcttaggttttctccaactctcagctctcagctctctactctctactctctcttggttgtgcttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC