1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CCACAATGGCTCCGCCCTCGCCACCGTGATCCTCGACGCCACTTCGCACCCCTCGCTCTTCGCCTTTTCGGAGATTCTCGCTGTTCCCAATGTTGTTGAGgtctgtatcgttttttgttttggattctgatttgaagcttatccgcgtttgccctatgtttagttcccaaggaaaattgggaaaggtcacgcattttctc...
species | Vitis vinifera |
transcript | Vv15s0021g01580.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCTCGCTCTTCGCCTTTTCGGAGATTCTCGCTGTTCCCAATGTTGTTGAG CTTGGAGGAACTGAGAATTCTGTATATCTCGATATGCTTCGTTTGTTTGCAEST: gi|351024207|gb|FQ423630.1|FQ423630
genomic: CCTCGCTCTTCGCCTTTTCGGAGATTCTCGCTGTTCCCAATGTTGTTGAGgtctgtatcg ... ttcactgcagCTTGGAGGAACTGAGAATTCTGTATATCTCGATATGCTTCGTTTGTTTGCA
EST: CCTCGCTCTTCGCCTTTTCGGAGATTCTCGCTGTTCCCAATGTTGTTGAG CTTGGAGGAACTGAGAATTCTGTATATCTCGATATGCTTCGTTTGTTTGCAEST: gi|351030256|gb|FQ432194.1|FQ432194
genomic: CCTCGCTCTTCGCCTTTTCGGAGATTCTCGCTGTTCCCAATGTTGTTGAGgtctgtatcg ... ttcactgcagCTTGGAGGAACTGAGAATTCTGTATATCTCGATATGCTTCGTTTGTTTGCA
EST: CCTCGCTCTTCGCCTTTTCGGAGATTCTCGCTGTTCCCAATGTTGTTGAG CTTGGAGGAACTGAGAATTCTGTATATCTCGATATGCTTCGTTTGTTTGCAEST: gi|161721497|gb|FC069725.1|FC069725
genomic: CCTCGCTCTTCGCCTTTTCGGAGATTCTCGCTGTTCCCAATGTTGTTGAGgtctgtatcg ... ttcactgcagCTTGGAGGAACTGAGAATTCTGTATATCTCGATATGCTTCGTTTGTTTGCA
EST: CCTCGCTCTTCGCCTTTTCGGAGATTCTCGCTGTTCCCAATGTTGTTGAG CTTGGAGGAACTGAGAATTCTGTATATCTCGATATGCTTCGTTTGTTTGCAEST: gi|351028781|gb|FQ433211.1|FQ433211
genomic: CCTCGCTCTTCGCCTTTTCGGAGATTCTCGCTGTTCCCAATGTTGTTGAGgtctgtatcg ... ttcactgcagCTTGGAGGAACTGAGAATTCTGTATATCTCGATATGCTTCGTTTGTTTGCA
EST: CCTCGCTCTTCGCCTTTTCGGAGATTCTCGCTGTTCCCAATGTTGTTGAG CTTGGAGGAACTGAGAATTCTGTATATCTCGATATGCTTCGTTTGTTTGCAEST: gi|352798513|gb|FQ480538.1|FQ480538
genomic: CCTCGCTCTTCGCCTTTTCGGAGATTCTCGCTGTTCCCAATGTTGTTGAGgtctgtatcg ... ttcactgcagCTTGGAGGAACTGAGAATTCTGTATATCTCGATATGCTTCGTTTGTTTGCA
EST: CCTCGCTCTTCGCCTTTTCGGAGATTCTCGCTGTTCCCAATGTTGTTGAG CTTGGAGGAACTGAGAATTCTGTATATCTCGATATGCTTCGTTTGTTTGCAEST: gi|351039449|gb|FQ461316.1|FQ461316
genomic: CCTCGCTCTTCGCCTTTTCGGAGATTCTCGCTGTTCCCAATGTTGTTGAGgtctgtatcg ... ttcactgcagCTTGGAGGAACTGAGAATTCTGTATATCTCGATATGCTTCGTTTGTTTGCA
EST: CCTCGCTCTTCGCCTTTTCGGAGATTCTCGCTGTTCCCAATGTTGTTGAG CTTGGAGGAACTGAGAATTCTGTATATCTCGATATGCTTCGTTTGTTTGCAEST: gi|351029115|gb|FQ435315.1|FQ435315
genomic: CCTCGCTCTTCGCCTTTTCGGAGATTCTCGCTGTTCCCAATGTTGTTGAGgtctgtatcg ... ttcactgcagCTTGGAGGAACTGAGAATTCTGTATATCTCGATATGCTTCGTTTGTTTGCA
EST: CCTCGCTCTTCGCCTTTTCGGAGATTCTCGCTGTTCCCAATGTTGTTGAG CTTGGAGGAACTGAGAATTCTGTATATCTCGATATGCTTCGTTTGTTTGCAEST: gi|352791342|gb|FQ479729.1|FQ479729
genomic: CCTCGCTCTTCGCCTTTTCGGAGATTCTCGCTGTTCCCAATGTTGTTGAGgtctgtatcg ... ttcactgcagCTTGGAGGAACTGAGAATTCTGTATATCTCGATATGCTTCGTTTGTTTGCA
EST: CCTCGCTCTTCGCCTTTTCGGAGATTCTCGCTGTTCCCAATGTTGTTGAG CTTGGAGGAACTGAGAATTCTGTATATCTCGATATGCTTCGTTTGTTTGCAEST: gi|351025041|gb|FQ433458.1|FQ433458
genomic: CCTCGCTCTTCGCCTTTTCGGAGATTCTCGCTGTTCCCAATGTTGTTGAGgtctgtatcg ... ttcactgcagCTTGGAGGAACTGAGAATTCTGTATATCTCGATATGCTTCGTTTGTTTGCA
EST: CCTCGCTCTTCGCCTTTTCGGAGATTCTCGCTGTTCCCAATGTTGTTGAG CTTGGAGGAACTGAGAATTCTGTATATCTCGATATGCTTCGTTTGTTTGCA
genomic: CCTCGCTCTTCGCCTTTTCGGAGATTCTCGCTGTTCCCAATGTTGTTGAGgtctgtatcg ... ttcactgcagCTTGGAGGAACTGAGAATTCTGTATATCTCGATATGCTTCGTTTGTTTGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCACAATGGCTCCGCCCTCGCCACCGTGATCCTCGACGCCACTTCGCACCCCTCGCTCTTCGCCTTTTCGGAGATTCTCGCTGTTCCCAATGTTGTTGAGgtctgtatcgttttttgttttggattctgatttgaagcttatccgcgtttgccctatgtttagttcccaaggaaaattgggaaaggtcacgcattttctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aggaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggaaag