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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTTCTCCGGCGTTGGTTGCTCTCTCATTCGTCAGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCGgtgagtttttctctttcttcatctctctttccccctgttctcaatattctcaatgctcttgagatctgccccatttcagattagggtctctctgtctctc...

Basic information

species Vitis vinifera
transcript Vv14s0171g00330.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|294966487|gb|GW837622.1|GW837622
EST:     AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCG                         AACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
genomic: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCGgtgagttttt ... gaattaacagAACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
EST: gi|349823939|gb|FQ417326.1|FQ417326
EST:     AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCG                         AACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
genomic: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCGgtgagttttt ... gaattaacagAACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
EST: gi|71857128|gb|DT006183.1|DT006183
EST:     AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCG                         AACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
genomic: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCGgtgagttttt ... gaattaacagAACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
EST: gi|33405585|gb|CF211212.1|CF211212
EST:     AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCG                         AACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
genomic: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCGgtgagttttt ... gaattaacagAACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
EST: gi|71856777|gb|DT005832.1|DT005832
EST:     AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCG                         AACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
genomic: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCGgtgagttttt ... gaattaacagAACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
EST: gi|110693499|gb|EE069785.1|EE069785
EST:     TTATCTCCGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCG                         AACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
genomic: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCGgtgagttttt ... gaattaacagAACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
EST: gi|71860914|gb|DT009969.1|DT009969
EST:     AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCG                         AACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
genomic: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCGgtgagttttt ... gaattaacagAACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
EST: gi|349820893|gb|FQ408601.1|FQ408601
EST:     AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCG                         TACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
genomic: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCGgtgagttttt ... gaattaacagAACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
EST: gi|110699690|gb|EE076907.1|EE076907
EST:     AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCG                         AACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
genomic: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCGgtgagttttt ... gaattaacagAACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
EST: gi|71876529|gb|DT025584.1|DT025584
EST:     AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCG                         AACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
genomic: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCGgtgagttttt ... gaattaacagAACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
EST: gi|349811881|gb|FQ410678.1|FQ410678
EST:     AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCG                         AACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
genomic: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCGgtgagttttt ... gaattaacagAACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
EST: gi|161711586|gb|FC061248.1|FC061248
EST:     AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCG                         AACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
genomic: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCGgtgagttttt ... gaattaacagAACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
EST: gi|37189836|gb|CF609185.1|CF609185
EST:     AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCG                         AACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
genomic: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCGgtgagttttt ... gaattaacagAACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
EST: gi|349809818|gb|FQ398443.1|FQ398443
EST:     AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCG                         AACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
genomic: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCGgtgagttttt ... gaattaacagAACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
EST: gi|161713380|gb|FC062785.1|FC062785
EST:     AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCG                         AACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
genomic: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCGgtgagttttt ... gaattaacagAACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
EST: gi|22008847|gb|BQ793881.1|BQ793881
EST:     CAACTCTCTGACCACCAAAACGCCGTCGTTGCG                         AACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
genomic: CAACTCTCTGACCACCAAAACGCCGTCGTTGCGgtgagttttt ... gaattaacagAACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
EST: gi|71857556|gb|DT006611.1|DT006611
EST:     AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCG                         AACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
genomic: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCGgtgagttttt ... gaattaacagAACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
EST: gi|71860746|gb|DT009801.1|DT009801
EST:     AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCG                         AACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
genomic: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCGgtgagttttt ... gaattaacagAACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
EST: gi|349819860|gb|FQ404536.1|FQ404536
EST:     AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCG                         AACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
genomic: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCGgtgagttttt ... gaattaacagAACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
EST: gi|161712482|gb|FC061787.1|FC061787
EST:     AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCG                         AACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
genomic: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCGgtgagttttt ... gaattaacagAACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
EST: gi|37188441|gb|CF607790.1|CF607790
EST:     ATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCG                         AACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
genomic: ATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCGgtgagttttt ... gaattaacagAACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
EST: gi|161707104|gb|FC057294.1|FC057294
EST:     AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCG                         AACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
genomic: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCGgtgagttttt ... gaattaacagAACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
EST: gi|110690784|gb|EE068257.1|EE068257
EST:     AGCTCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCG                         AACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
genomic: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCGgtgagttttt ... gaattaacagAACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATTTCTCCGGCGTTGGTTGCTCTCTCATTCGTCAGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCGgtgagtttttctctttcttcatctctctttccccctgttctcaatattctcaatgctcttgagatctgccccatttcagattagggtctctctgtctctc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tccccct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgcccc