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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGGTGTTTGGTTTCGGTTACTGGTGAGCCTTCTCCGTACTGTGAAGTCCTGATAAAAGGGGAATAATGGCGACGAGTTCTTTTAACGGCAACATGAAGgcaatgatttcttctttcactgtgtttgctctgtcattttcattattttttttttcttttggttcattagaaatgcaagtttaaccctctgtttgctttc...

Basic information

species Vitis vinifera
transcript Vv14s0171g00250.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110381796|gb|EC935401.1|EC935401
EST:     CTGATAAAAGGGGAATAATGGCGACGAGTTCTTTTAACGGCAACATGAAG                         AAAGCACTTGCTGGCCTGAGACGAATCAATTTGGAAGGTTTGCGATGGCGA
genomic: CTGATAAAAGGGGAATAATGGCGACGAGTTCTTTTAACGGCAACATGAAGgcaatgattt ... cttcatgcagAAAGCACTTGCTGGCCTGAGACGAATCAATTTGGAAGGTTTGCGATGGCGA
EST: gi|77585738|gb|DV221960.1|DV221960
EST:     CTGATAAAAGGGGAATAATGGCGACGAGTTCTTTTAACGGCAACATGAAG                         AAAGCACTTGCTGGCCTGAGACGAATCAATTTGGAAGGTTTGCGATGGCGA
genomic: CTGATAAAAGGGGAATAATGGCGACGAGTTCTTTTAACGGCAACATGAAGgcaatgattt ... cttcatgcagAAAGCACTTGCTGGCCTGAGACGAATCAATTTGGAAGGTTTGCGATGGCGA
EST: gi|71870914|gb|DT019969.1|DT019969
EST:     GGATAAATA-TGGAATAATGGCGACGAGTTCTTTTAACGGCAACATGAAG                         AAAGCACTTGCTGGCCTGAGACGAATCAATTTGGAAGGTTTGCGATGGCGA
genomic: TGATAAA-AGGGGAATAATGGCGACGAGTTCTTTTAACGGCAACATGAAGgcaatgattt ... cttcatgcagAAAGCACTTGCTGGCCTGAGACGAATCAATTTGGAAGGTTTGCGATGGCGA
EST: gi|110382064|gb|EC938387.1|EC938387
EST:     CTGATAAAAGGGGAATAATGGCGACGAGTTCTTTTAACGGCAACATGAAG                         AAAGCACTTGCTGGCNTGAGACGAATCAATTTGGAAGGTTTGCGATGGCGA
genomic: CTGATAAAAGGGGAATAATGGCGACGAGTTCTTTTAACGGCAACATGAAGgcaatgattt ... cttcatgcagAAAGCACTTGCTGGCCTGAGACGAATCAATTTGGAAGGTTTGCGATGGCGA
EST: gi|26257383|gb|CA808446.1|CA808446
EST:     CTGATAAAAGGGGAATAATGGCGACGAGTTCTTTTAACGGCAACATGAAG                         AAAGCACTTGCTGGCCTGAGACGAATCAATTTGGAAGGTTTGCGATGGCGA
genomic: CTGATAAAAGGGGAATAATGGCGACGAGTTCTTTTAACGGCAACATGAAGgcaatgattt ... cttcatgcagAAAGCACTTGCTGGCCTGAGACGAATCAATTTGGAAGGTTTGCGATGGCGA
EST: gi|349826908|gb|FQ418999.1|FQ418999
EST:     CTGATAAAAGGGGAATAATGGCGACGAGTTCTTTTAACGGCAACATGAAG                         AAAGCACTTGCTGGCCTGAGACGAATCAATTTGGAAGGTTTGCGATGGCGA
genomic: CTGATAAAAGGGGAATAATGGCGACGAGTTCTTTTAACGGCAACATGAAGgcaatgattt ... cttcatgcagAAAGCACTTGCTGGCCTGAGACGAATCAATTTGGAAGGTTTGCGATGGCGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TATGGTGTTTGGTTTCGGTTACTGGTGAGCCTTCTCCGTACTGTGAAGTCCTGATAAAAGGGGAATAATGGCGACGAGTTCTTTTAACGGCAACATGAAGgcaatgatttcttctttcactgtgtttgctctgtcattttcattattttttttttcttttggttcattagaaatgcaagtttaaccctctgtttgctttc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctctgt