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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAACACAACATGTGGTTGGAGGAAGCCAGGGTTGGGATGAATCATCAGATTATAGCAAATGGGCATCTGGTCAAACATTCGAGGTTGGCGATCAACTTGgtatgtttcttcccttttagtaattggcctagtatatacaaatgcaataagagcatgcatatagccagatttaccagttcaagccatggtttggcttgttagggctgatttttgatgtcattaatcatatttttggacag

Basic information

species Vitis vinifera
transcript Vv14s0171g00100.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0171g00100.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA19G25570.1 (Glycine max), 5'ss of exon 1
GCAACACAACATGTGGTTGGAGGAAGCCAGGGTTGGGATGAATCATCAGATTATAGCAAATGGGCATCTGGTCAAACATTCGAGGTTGGCGATCAACTTGgtatgtttcttcccttttagt--aattggcctagtatatacaaatgcaataagagcatgcatatagcca-gatttaccagttcaagccatggtttggcttgttagggctgatttttgatgtcattaatcatatttttggacag
|||  ||||||||| ||||| |||||||| ||||||||||||||| |||| |  |     ||||  || || ||||||||  ||||||||||||||||||||||||||||| ||  | | |  ||  |   || | || |   |   | ||  |   |||||      |  | |||||| |   |        ||| |||                                           
GCAGAACAACATGTAGTTGGTGGAAGCCAAGGTTGGGATGAATCAACAGACTTCAATTCTTGGGTTTCAGGCCAAACATTTAAGGTTGGCGATCAACTTGgtatgtttcttgcccataattttaaaggatttaatttaaatgcactaactataaaattgcattccattataaattaccattatgataagattcttgactt-------------------------------------------

upper sequence: Vv14s0171g00100.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA16G06240.1 (Glycine max), 5'ss of exon 1
GCAACACAACATGTGGTTGGAGGAAGCCAGGGTTGGGATGAATCATCAGATTATAGCAAATGGGCATCTGGTCAAACATTCGAGGTTGGCGATCAACTTGgtatgtttcttcccttttagtaattggcctagtatatacaaatgcaataagagcatgcatatagcca-gatttaccagttcaagccatggtttggcttgttagggctgatttttgatgtcattaatcatatttttggacag
|||  ||||||||| ||||| |||||||| ||||||||||||||  |||| |  |     ||||  || || | ||||||   |||||||||||||| |||||| | |   |  |  |  |||  |   || |  | |   |   | ||  |   ||| |  |   |  | ||| ||| |     ||   ||    | ||                                         
GCAGAACAACATGTAGTTGGTGGAAGCCAAGGTTGGGATGAATCCACAGACTTCAATTCTTGGGTTTCAGGCCGAACATTTATGGTTGGCGATCAACGTGgtatttcttaccaataattttaaaggatttaattcaaatgcacaaactataaaattgctttcaattataaattatcagattgt-tcacttttataatagtc----------------------------------------

upper sequence: Vv14s0171g00100.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA05G14800.1 (Glycine max), 5'ss of exon 1
GCAACACAACATGTGGTTGGAGGAAGCCAGGGTTGGGATGAATCATCAGATTATAGCAAATGGGCATCTGGTCAAACATTCGAGGTTGGCGATCAACTTGgtatgtttcttccctt--ttagtaattggcct-----agtatatacaaatgcaataagagcatgcatatagccagatttaccagttcaagccatggtttggcttgttagggctgatttttgatgtcattaatcatatttttggacag
||| |||||||||| ||||| |||||||| || |||||| ||||  |||| | ||    |||| | || || ||||||||| ||||||| ||| |||||||||||||||||  | |  |||   ||||| ||       |||||||   |||| | | | ||   | ||   |   | |   |   |||  || | |||                                                
GCAGCACAACATGTAGTTGGTGGAAGCCAAGGCTGGGATCAATCCACAGACTTTAAGTCATGGACTTCAGGCCAAACATTCAAGGTTGGAGATAAACTTGgtatgtttctttacataattatacattggtctctttcgttatatacctttgca-tgacaccaaagaaattatcttctctcaaaagccaaaacaagattttc----------------------------------------------