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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGAGGTGAGAGTGCTTGAAAATGGTCCAGCGTCTCACATACCGCAAACGGCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTGgtgattcttctgtaaaacccttggtttttcttttcttcagtattttattgcatctgttagtttatttgggtgatttggtttgttgatcggaacgtgtatt...

Basic information

species Vitis vinifera
transcript Vv14s0108g00850.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0108g00850.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G166963_T02 (Zea mays), 5'ss of exon 1
GGGAGGTGAGAGTGCTTGAAAATGGTCCAGCGTCTCACATACCGCAAACGGCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTGgt--gattcttctgtaaaacccttggtttt------tcttttcttcagtattttattgcatctgttagtttatttgggtgatttggtttgttgatcggaacgtgtatt----------
||   | | ||  ||   || ||||| |||||||| || |||||||| ||||| ||||||||||| || || ||||||    |||||||||| |||||||||  |  ||| ||  |   ||  |  ||||      | ||| |||     |||| |||  ||  ||  | | || |  ||| |  |||| ||    |  |  |   ||          
GGCGCGCGCGACGGCGGCAAGATGGTGCAGCGTCTGACCTACCGCAAGCGGCACAGCTATGCCACGAAGTCCAACCAGACGCGGGTCGTCAAGACCCCTGgtccggatctcctcgacttcctatcattttctcttctgtttccttttcacttttgttggttcctttgatatcttggtttgagtatgttttttatgtgctagattggtttgtttttcag

upper sequence: Vv14s0108g00850.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G152573_T04 (Zea mays), 5'ss of exon 1
GGGAGGTGAGAGTGCTTG-AAAATGGTCCAGCGTCTCACATACCGCAAACGGCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTGgtgattcttctgtaaaacccttggtttttcttttcttcagtattttattgcatctgttagtttatttgggtgatttggtttgttgatcggaacgtgtatt---------
 | ||  | |  ||   | || ||||| ||||| ||||| ||||| || ||||| ||||| ||||||||||| ||||||  | | |||||||| || |||||| |       | |     || | ||  ||  | |  |  | |||   | | |     || || |   | |    |   | | ||||  |  | ||| ||         
-GAAGCAGCGGCTGGGAGCAAGATGGTGCAGCGCCTCACCTACCGGAAGCGGCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTGgtaagatcagcgca-----ctcgcttggtcgatcccacgttgtttctgttcgtgc---aggttgtagagataggatt-ctcgctgatttgttcatgttttggttaggag

upper sequence: Vv14s0108g00850.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA18G49340.1 (Glycine max), 5'ss of exon 1
GGGAGGTGAGAGTGCTTGAAAATGGTCCAGCGTCTCACATACCGCAAACGGCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTGgtgattcttctgtaaaacccttggtttttcttttcttcagtattttattgcatctgttagtttatttgggtgatttggtttgttgatcggaacgtgtatt----------------------------------------------------------------------------------
        |         |  ||||| ||| | ||||| || ||||| || ||||||||||| |||||||| ||||||||| |||| || || |||||||||   | | || |     | ||  | ||| |||| |           |   |  |||   ||| |||       ||  | | ||||||  ||  | ||||                                                                                  
-CACTCCCATCAACAGCAACGATGGTGCAGAGGCTCACTTATCGCAAGCGCCATAGCTATGCTACCAAATCCAACCAGCACCGGGTTGTTAAGACCCCTGGtatatttcctctttgttctttt-tatttgttttgtgtttccccccctcctaattgtggttttttttattactattattattttgatctcaat-tatattccttcagttgtcgtcaaaatttgatttcgttgttgttgtttgatgtttttactatttttttttcaaatgggtatgtctcagg

upper sequence: Vv14s0108g00850.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT1G69620.1 (Arabidopsis thaliana), 5'ss of exon 1
GGGAGGTGAGAGTGCTTGAAAATGGTCCAGCGTCTCACATACCGCAAACGGCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTGgt--gattcttctgtaaaacccttggtttttcttttcttcag--tattttattgcatctgttagtttatttgggtgatttggtttgttgatcggaacgtgtatt
| |||            ||||||||| ||||| ||    |||||   ||| || || || ||||||||||| |||||||||||| |||||||||| || |||  | |   | | |  || |     |  |    |||   |   | | |   || |||| | || ||  |    ||  |||   | |||||    |  || |  
GTGAGACAGAGAGAAGCGAAAATGGTGCAGCGCCTTGTTTACCGATCACGACACAGTTACGCCACCAAATCCAACCAGCACAGGATCGTCAAAACTCCAGgtctgttctgtttcttcaatcgcatatgctgaaattcacaaatctgtatccatggatctataagatt--tgaaatgtattgacgtattgat---gatttgcag-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110426349|gb|EC992755.1|EC992755
EST:     GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTG                         GAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
genomic: GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTGgtgattcttc ... ttgtatgtagGAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
EST: gi|110401727|gb|EC968344.1|EC968344
EST:     GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTG                         GAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
genomic: GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTGgtgattcttc ... ttgtatgtagGAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
EST: gi|351029961|gb|FQ430703.1|FQ430703
EST:     GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTG                         GAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
genomic: GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTGgtgattcttc ... ttgtatgtagGAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
EST: gi|71867924|gb|DT016979.1|DT016979
EST:     GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTG                         GAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
genomic: GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTGgtgattcttc ... ttgtatgtagGAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
EST: gi|71875778|gb|DT024833.1|DT024833
EST:     GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTG                         GAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
genomic: GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTGgtgattcttc ... ttgtatgtagGAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
EST: gi|110696892|gb|EE073402.1|EE073402
EST:     GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTG                         GAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
genomic: GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTGgtgattcttc ... ttgtatgtagGAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
EST: gi|33402492|gb|CF208119.1|CF208119
EST:     GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTG                         GAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
genomic: GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTGgtgattcttc ... ttgtatgtagGAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
EST: gi|27582431|gb|CB005126.1|CB005126
EST:     GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTG                         GAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
genomic: GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTGgtgattcttc ... ttgtatgtagGAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
EST: gi|110704730|gb|EE081740.1|EE081740
EST:     GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTG                         GAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
genomic: GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTGgtgattcttc ... ttgtatgtagGAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
EST: gi|110694427|gb|EE071525.1|EE071525
EST:     GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTG                         GAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
genomic: GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTGgtgattcttc ... ttgtatgtagGAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
EST: gi|110376594|gb|EC941653.1|EC941653
EST:     GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTG                         GAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
genomic: GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTGgtgattcttc ... ttgtatgtagGAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
EST: gi|34544378|gb|CF512610.1|CF512610
EST:     GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTG                         GAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
genomic: GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTGgtgattcttc ... ttgtatgtagGAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
EST: gi|34545525|gb|CF513757.1|CF513757
EST:     GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTG                         GAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
genomic: GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTGgtgattcttc ... ttgtatgtagGAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
EST: gi|110399562|gb|EC966073.1|EC966073
EST:     GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTG                         GAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
genomic: GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTGgtgattcttc ... ttgtatgtagGAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
EST: gi|110689386|gb|EE065575.1|EE065575
EST:     GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTG                         GAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
genomic: GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTGgtgattcttc ... ttgtatgtagGAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
EST: gi|110693670|gb|EE070103.1|EE070103
EST:     GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTG                         GAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
genomic: GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTGgtgattcttc ... ttgtatgtagGAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
EST: gi|30296475|gb|CB973269.1|CB973269
EST:     GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTG                         GAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
genomic: GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTGgtgattcttc ... ttgtatgtagGAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
EST: gi|110402092|gb|EC968725.1|EC968725
EST:     GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTG                         GAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
genomic: GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTGgtgattcttc ... ttgtatgtagGAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
EST: gi|71872787|gb|DT021842.1|DT021842
EST:     GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTG                         GAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
genomic: GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTGgtgattcttc ... ttgtatgtagGAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
EST: gi|110728053|gb|EE103286.1|EE103286
EST:     GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTG                         GAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
genomic: GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTGgtgattcttc ... ttgtatgtagGAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
EST: gi|110375579|gb|EC940580.1|EC940580
EST:     GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTG                         GAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
genomic: GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTGgtgattcttc ... ttgtatgtagGAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
EST: gi|71871640|gb|DT020695.1|DT020695
EST:     GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTG                         GAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
genomic: GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTGgtgattcttc ... ttgtatgtagGAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
EST: gi|30130884|gb|CB916223.1|CB916223
EST:     GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTG                         GAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
genomic: GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTGgtgattcttc ... ttgtatgtagGAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
EST: gi|110404494|gb|EC969640.1|EC969640
EST:     GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTG                         GAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
genomic: GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTGgtgattcttc ... ttgtatgtagGAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
EST: gi|110691699|gb|EE070097.1|EE070097
EST:     GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTG                         GAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
genomic: GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTGgtgattcttc ... ttgtatgtagGAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
EST: gi|110702167|gb|EE080571.1|EE080571
EST:     GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTG                         GAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
genomic: GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTGgtgattcttc ... ttgtatgtagGAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
EST: gi|110361458|gb|EC924931.1|EC924931
EST:     GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTG                         GAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
genomic: GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTGgtgattcttc ... ttgtatgtagGAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
EST: gi|34545438|gb|CF513670.1|CF513670
EST:     GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTG                         GAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
genomic: GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTGgtgattcttc ... ttgtatgtagGAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
EST: gi|110387708|gb|EC952399.1|EC952399
EST:     GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTG                         GAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
genomic: GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTGgtgattcttc ... ttgtatgtagGAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
EST: gi|71857004|gb|DT006059.1|DT006059
EST:     GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTG                         GAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
genomic: GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTGgtgattcttc ... ttgtatgtagGAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
EST: gi|71857314|gb|DT006369.1|DT006369
EST:     GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTG                         GAGGAAAGTTGGCGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
genomic: GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTGgtgattcttc ... ttgtatgtagGAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
EST: gi|110384235|gb|EC948660.1|EC948660
EST:     GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTG                         GAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
genomic: GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTGgtgattcttc ... ttgtatgtagGAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
EST: gi|110397100|gb|EC962821.1|EC962821
EST:     GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTG                         GAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
genomic: GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTGgtgattcttc ... ttgtatgtagGAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
EST: gi|110699945|gb|EE077421.1|EE077421
EST:     GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTG                         GAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
genomic: GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTGgtgattcttc ... ttgtatgtagGAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
EST: gi|110376077|gb|EC941118.1|EC941118
EST:     GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTG                         GAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
genomic: GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTGgtgattcttc ... ttgtatgtagGAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
EST: gi|34549520|gb|CF517752.1|CF517752
EST:     GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTG                         GAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
genomic: GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTGgtgattcttc ... ttgtatgtagGAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
EST: gi|87585832|gb|DY474387.1|DY474387
EST:     GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTG                         GAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
genomic: GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTGgtgattcttc ... ttgtatgtagGAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
EST: gi|110413639|gb|EC979436.1|EC979436
EST:     GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTG                         GAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT
genomic: GCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTGgtgattcttc ... ttgtatgtagGAGGAAAGTTGGTGTATCAGAGCACCAAGAAGAGGGCCAATGGTCCCAAAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGGAGGTGAGAGTGCTTGAAAATGGTCCAGCGTCTCACATACCGCAAACGGCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTGgtgattcttctgtaaaacccttggtttttcttttcttcagtattttattgcatctgttagtttatttgggtgatttggtttgttgatcggaacgtgtatt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtaaaac