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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGATGGTGGAATATATGAGCTCAGGAAAGGAGATTTCTCAGCGAAGTTCACCAAGTGGGGTGCAGCCATTGTTTCAGTTGTTCTTCCTGACAAAAATGgtctgttcattttggcttcttcactttctgttattctgtttgtttggggtttttaagattttctcaacaactttcttttcttttccag

Basic information

species Vitis vinifera
transcript Vv14s0108g00270.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110698658|gb|EE076404.1|EE076404
EST:     CACCAAGTGGGGTGCAGCCATTGTTTCAGTTGTTCTTCCTGACAAAAATG                         GGAAGTTGGCTGATGTTGTTCTTGGGTATGATTCAGCTAAGGAGTACAAG
genomic: CACCAAGTGGGGTGCAGCCATTGTTTCAGTTGTTCTTCCTGACAAAAATGgtctgttcat ... tcttttccagGGAAGTTGGCTGATGTTGTTCTTGGGTATGATTCAACTAAGGAGTACAAG
EST: gi|161709120|gb|FC058392.1|FC058392
EST:     CACCAAGTGGGGTGCAGCCATTGTTTCAGTTGTTCTTCCTGACAAAAATG                         GGAAGTTGGCTGATGTTGTTCTTGGGTATGATTCAACTAAGGAGTACAAG
genomic: CACCAAGTGGGGTGCAGCCATTGTTTCAGTTGTTCTTCCTGACAAAAATGgtctgttcat ... tcttttccagGGAAGTTGGCTGATGTTGTTCTTGGGTATGATTCAACTAAGGAGTACAAG
EST: gi|110693694|gb|EE070148.1|EE070148
EST:     CACCAAGTGGGGTGCAGCCATTGTTTCAGTTGTTCTTCCTGACAAAAATG                         GGAAGTTGGCTGATGTTGTTCTTGGGTATGATTCAACTAAGGAGTACAAG
genomic: CACCAAGTGGGGTGCAGCCATTGTTTCAGTTGTTCTTCCTGACAAAAATGgtctgttcat ... tcttttccagGGAAGTTGGCTGATGTTGTTCTTGGGTATGATTCAACTAAGGAGTACAAG
EST: gi|161709859|gb|FC058919.1|FC058919
EST:     CACCAAGTGGGGTGCAGCCATTGTTTCAGTTGTTCTTCCTGACAAAAATG                         GGAAGTTGGCTGATGTTGTTCTTGGGTATGATTCAACTAAGGAGTACAAT
genomic: CACCAAGTGGGGTGCAGCCATTGTTTCAGTTGTTCTTCCTGACAAAAATGgtctgttcat ... tcttttccagGGAAGTTGGCTGATGTTGTTCTTGGGTATGATTCAACTAAGGAGTACAAG