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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTTTTGTTTGTCACTCATCAGCAGATCCATTTCCAGTTTCTGTGGTTGCACCATTTTGCTTCTTTTTCTGCTTTCTTGCTCCTGCTTTACTTCTACAGgtgggcatttttctccttctttttcgtttaatcttttcaaaatttggagtttttttggttgtttctttcttcagtttattgggtttagttagtggcatgg...

Basic information

species Vitis vinifera
transcript Vv14s0083g01160.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161720750|gb|FC069969.1|FC069969
EST:     CACCATTTTGCTTCTTTTTCTGCTTTCTTGCTCCTGCTTTACTTCTACAG                         AAGCCTATGATGCACTGGATCCCAATGGAAATATCACGATCAAATGGGATA
genomic: CACCATTTTGCTTCTTTTTCTGCTTTCTTGCTCCTGCTTTACTTCTACAGgtgggcattt ... tccttttcagAAGCCTATGATGCACTGGATCCCAATGGAAATATCACGATCAAATGGGATA
EST: gi|110684714|gb|EE062309.1|EE062309
EST:     CACCATTTTGCTTCTTTTTCTGCTTTCTTGCTCCTGCTTTACTTCTACAG                         AAGCCTATGATGCACTGGATCCCAATGGAAATATCACGATCAAATGGGATA
genomic: CACCATTTTGCTTCTTTTTCTGCTTTCTTGCTCCTGCTTTACTTCTACAGgtgggcattt ... tccttttcagAAGCCTATGATGCACTGGATCCCAATGGAAATATCACGATCAAATGGGATA
EST: gi|161718220|gb|FC068914.1|FC068914
EST:     CACCATTTTGCTTCTTTTTCTGCTTTCTTGCTCCTGCTTTACTTCTACAG                         AAGCCTATGATGCACTGGATCCCAATGGAAATATCACGATCAAATGGGATA
genomic: CACCATTTTGCTTCTTTTTCTGCTTTCTTGCTCCTGCTTTACTTCTACAGgtgggcattt ... tccttttcagAAGCCTATGATGCACTGGATCCCAATGGAAATATCACGATCAAATGGGATA
EST: gi|110371120|gb|EC934895.1|EC934895
EST:     CACCATTTTGCTTCTTTTTCTGCTTTCTTGCTCCTGCTTTACTTCTACAG                         AAGCCTATGATGCACTGGATCCCAATGGAAATATCACGATCAAATGGGATA
genomic: CACCATTTTGCTTCTTTTTCTGCTTTCTTGCTCCTGCTTTACTTCTACAGgtgggcattt ... tccttttcagAAGCCTATGATGCACTGGATCCCAATGGAAATATCACGATCAAATGGGATA
EST: gi|110699176|gb|EE075944.1|EE075944
EST:     CACCATTTTGCTTCTTTTTCTGCTTTCTTGCTCCTGCTTTACTTCTACAG                         AAGCCTATGATGCACTGGATCCCAATGGAAATATCACGATCAAATGGGATA
genomic: CACCATTTTGCTTCTTTTTCTGCTTTCTTGCTCCTGCTTTACTTCTACAGgtgggcattt ... tccttttcagAAGCCTATGATGCACTGGATCCCAATGGAAATATCACGATCAAATGGGATA
EST: gi|37189092|gb|CF608441.1|CF608441
EST:     CACCATTTTGCTTCTTTTTCTGCTTTCTTGCTCCTGCTTTACTTCTACAG                         AAGCCTATGATGCACTGGATCCCAATGGAAATATCACGATCAAATGGGATA
genomic: CACCATTTTGCTTCTTTTTCTGCTTTCTTGCTCCTGCTTTACTTCTACAGgtgggcattt ... tccttttcagAAGCCTATGATGCACTGGATCCCAATGGAAATATCACGATCAAATGGGATA
EST: gi|161709351|gb|FC059680.1|FC059680
EST:     CACCATTTTGCTTCTTTTTCTGCTTTCTTGCTCCTGCTTTACTTCTACAG                         AAGCCTATGATGCACTGGATCCCAATGGAAATATCACGATCAAATGGGATA
genomic: CACCATTTTGCTTCTTTTTCTGCTTTCTTGCTCCTGCTTTACTTCTACAGgtgggcattt ... tccttttcagAAGCCTATGATGCACTGGATCCCAATGGAAATATCACGATCAAATGGGATA
EST: gi|71859136|gb|DT008191.1|DT008191
EST:     CACCATTTTGCTTCTTTTTCTGCTTTCTTGCTCCTGCTTTACTTCTACAG                         AAGCCTATGATGCACTGGATCCCAATGGAAATATCACGATCAAATGGGATA
genomic: CACCATTTTGCTTCTTTTTCTGCTTTCTTGCTCCTGCTTTACTTCTACAGgtgggcattt ... tccttttcagAAGCCTATGATGCACTGGATCCCAATGGAAATATCACGATCAAATGGGATA
EST: gi|110724325|gb|EE100052.1|EE100052
EST:     CACCATTTTGCTTCTTTTTCTGCTTTCTTGCTCCTGCTTTACTTCTACAG                         AAGCCTATGATGCACTGGATCCCAATGGAAATATCACGATCAAATGGGATA
genomic: CACCATTTTGCTTCTTTTTCTGCTTTCTTGCTCCTGCTTTACTTCTACAGgtgggcattt ... tccttttcagAAGCCTATGATGCACTGGATCCCAATGGAAATATCACGATCAAATGGGATA
EST: gi|71857908|gb|DT006963.1|DT006963
EST:     CACCATTTTGCTTCTTTTTCTGCTTTCTTGCTCCTGCTTTAC-TCTACAG                         AAGCCTATGATGCACTGGATCCCAATGGAAATATCACGATCAAATGGGATA
genomic: CACCATTTTGCTTCTTTTTCTGCTTTCTTGCTCCTGCTTTACTTCTACAGgtgggcattt ... tccttttcagAAGCCTATGATGCACTGGATCCCAATGGAAATATCACGATCAAATGGGATA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGGTTTTGTTTGTCACTCATCAGCAGATCCATTTCCAGTTTCTGTGGTTGCACCATTTTGCTTCTTTTTCTGCTTTCTTGCTCCTGCTTTACTTCTACAGgtgggcatttttctccttctttttcgtttaatcttttcaaaatttggagtttttttggttgtttctttcttcagtttattgggtttagttagtggcatgg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccttc