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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTGACGCTGCTCTACTCGCACGGCAACGCGGCTGATCTGGGCCAGATGTATGAGTTGCTCAGTGAACTCAGTGTTCATCTCCCGGTTAACTTGTTAACgttagtgtgttatttcacgttttagaaactttgaattcaatttacatgtgtatactttgcgttcttttgtatgaggaagtggagatttgacttctgtgtggttcgttgtag

Basic information

species Vitis vinifera
transcript Vv14s0083g00800.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0083g00800.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA13G06890.1 (Glycine max), 5'ss of exon 1
CATTGACGCTGCTCTACTCGCACGGCAACGCGGCTGATCTGGGCCAGATGTATGAGTTGCTCAGTGAACTCAGTGTTCATCTCCCGGTTAACTTGTTAACgttagtgtgttatttcacgttttagaaactttgaattcaatt-tacatgtgtatactttgcgttcttttgtatgaggaagtggagatttgacttctgtgtggttcgttgtag
| |||||  |||| ||||||||||| ||||| ||||||||||| |||||||| |||||| |||| ||||||||| | || ||||  |||||| |  |   || ||| | |  |||  | | ||      |||  ||| | || |  |||| |||| |||  || |  || | |  | || |  |  |||   |  | ||             
CGTTGACTTTGCTTTACTCGCACGGAAACGCCGCTGATCTGGGTCAGATGTACGAGTTGTTCAGCGAACTCAGTATCCACCTCCGAGTTAACCTCATGGGgtcagtttctacttttccttctttttttttttttatttacttgtttatgtatatatttttggtacagttatttatgtaaatttacttttttttcttttga------------

upper sequence: Vv14s0083g00800.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA19G04900.1 (Glycine max), 5'ss of exon 1
CATTGACGCTGCTCTACTCGCACGGCAACGCGGCTGATCTGGGCCAGATGTATGAGTTGCTCAGTGAACTCAGTGTTCATCTCCCGGTTAACTTGTTAACgttagtgtgttatttcacgttttagaaactttgaattcaatttacatgtgtatact-ttgcgttcttttgtatgaggaagtggagatttgacttctgtgtggttcgttgtag
| |||||  |||| ||||||||||| ||||| ||||||||||| |||||||| |||||| |||| ||||||||| | || ||||  |||||| |  |   ||||||   || |   || || |   |  |||   || | ||    | |    | | ||   |||  || |  ||| |  |      |   |  || | |            
CGTTGACTTTGCTTTACTCGCACGGAAACGCCGCTGATCTGGGTCAGATGTACGAGTTGTTCAGCGAACTCAGTATCCACCTCCGAGTTAACCTCATGGGgttagtaatttctccaacattcttttattttttg-tttacttattttttacggagtattaatttccattattggagaaccttattgatgatcacctttatt-----------

upper sequence: Vv14s0083g00800.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA18G51140.1 (Glycine max), 5'ss of exon 1
CATTGACGCTGCTCTACTCGCACGGCAACGCGGCTGATCTGGGCCAGATGTATGAGTTGCTCAGTGAACTCAGTGTTCATCTCCCGGTTAACTTGTTAACgttagtgtgttatttcacgttttagaaactttgaattcaatttacatgtgtatactttgcgttcttttgtatgaggaagtggagatttgacttctgtgtggttcgttgtag
| |||||  ||||||| |||||||||||||| || |||||||| |||||||| |||||| ||   ||||||||| | || ||||  || ||| |  ||  || | |   | | | | |  | |    || ||    |   || |||    |||   ||   || |  |  |     | ||  |   || | ||     |  ||        
CGTTGACCATGCTCTATTCGCACGGCAACGCCGCCGATCTGGGTCAGATGTACGAGTTGTTCTCCGAACTCAGTCTCCACCTCCGAGTCAACCTCCTATGgtcactac-tcactactcactctcactacgttctcgtt--ttcacactattattactttttttttccttcacacaaatgttaatcgttaatttaatcattttt--------