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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCACAGGCGAAGAAGATAAAGgtgagttctttcgctctttgtattttcgatcccgaaatctagggtaatttcttgaataatagccatgcagatccgttagatcaaccctaaattttcgcat...

Basic information

species Vitis vinifera
transcript Vv14s0068g02040.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161716886|gb|FC068120.1|FC068120
EST:     TTCACAGGCGAAGAAGATAAAG                         GATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
genomic: TTCACAGGCGAAGAAGATAAAGgtgagttctt ... ttttgtacagGATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
EST: gi|352795214|gb|FQ477324.1|FQ477324
EST:     TTCACAGGCGAAGAAGATAAAG                         GATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
genomic: TTCACAGGCGAAGAAGATAAAGgtgagttctt ... ttttgtacagGATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
EST: gi|71855076|gb|DT004131.1|DT004131
EST:     TTCACAGGCGAAGAAGATAAAG                         GATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
genomic: TTCACAGGCGAAGAAGATAAAGgtgagttctt ... ttttgtacagGATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
EST: gi|110702016|gb|EE080244.1|EE080244
EST:     TTCACAGGCGAAGAAGATAAAG                         GATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
genomic: TTCACAGGCGAAGAAGATAAAGgtgagttctt ... ttttgtacagGATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
EST: gi|161717659|gb|FC066914.1|FC066914
EST:     TTCACAGGCGAAGAAGATAAAG                         GATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
genomic: TTCACAGGCGAAGAAGATAAAGgtgagttctt ... ttttgtacagGATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
EST: gi|111125117|gb|EE253735.1|EE253735
EST:     TTCACAGGCGAAGAAGATAAAG                         GATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
genomic: TTCACAGGCGAAGAAGATAAAGgtgagttctt ... ttttgtacagGATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
EST: gi|161714832|gb|FC063280.1|FC063280
EST:     TTCACAGGCGAAGAAGATAAAG                         GATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
genomic: TTCACAGGCGAAGAAGATAAAGgtgagttctt ... ttttgtacagGATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
EST: gi|161719902|gb|FC066124.1|FC066124
EST:     TTCACAGGCGAAGAAGATAAAG                         GATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
genomic: TTCACAGGCGAAGAAGATAAAGgtgagttctt ... ttttgtacagGATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
EST: gi|110396191|gb|EC961872.1|EC961872
EST:     TTCACAGGCGAAGAAGATAAAG                         GATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
genomic: TTCACAGGCGAAGAAGATAAAGgtgagttctt ... ttttgtacagGATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
EST: gi|161713011|gb|FC062433.1|FC062433
EST:     TTCACAGGCGAAGAAGATAAAG                         GATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
genomic: TTCACAGGCGAAGAAGATAAAGgtgagttctt ... ttttgtacagGATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
EST: gi|110709022|gb|EE084118.1|EE084118
EST:     TTCACAGGCGAAGAAGATAAAG                         GATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
genomic: TTCACAGGCGAAGAAGATAAAGgtgagttctt ... ttttgtacagGATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
EST: gi|352789607|gb|FQ476205.1|FQ476205
EST:     TTCACAGGCGAAGAAGATAAAG                         GATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
genomic: TTCACAGGCGAAGAAGATAAAGgtgagttctt ... ttttgtacagGATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
EST: gi|351029823|gb|FQ427663.1|FQ427663
EST:     TTCACAGGCGAAGAAGATAAAG                         GATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
genomic: TTCACAGGCGAAGAAGATAAAGgtgagttctt ... ttttgtacagGATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
EST: gi|110384179|gb|EC948598.1|EC948598
EST:     TTCACAGGCGAAGAAGATAAAG                         GATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
genomic: TTCACAGGCGAAGAAGATAAAGgtgagttctt ... ttttgtacagGATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
EST: gi|110687785|gb|EE065593.1|EE065593
EST:     TTCACAGGCGAAGAAGATAAAG                         GATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
genomic: TTCACAGGCGAAGAAGATAAAGgtgagttctt ... ttttgtacagGATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
EST: gi|294967232|gb|GW840107.1|GW840107
EST:     TTCACAGGCGAAGAAGATAAAG                         GATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
genomic: TTCACAGGCGAAGAAGATAAAGgtgagttctt ... ttttgtacagGATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
EST: gi|110728646|gb|EE104397.1|EE104397
EST:     TTCACAGGCGAAGAAGATAAAG                         GATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
genomic: TTCACAGGCGAAGAAGATAAAGgtgagttctt ... ttttgtacagGATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
EST: gi|352785551|gb|FQ475554.1|FQ475554
EST:     TTCACAGGCGAAGAAGATAAAG                         GATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
genomic: TTCACAGGCGAAGAAGATAAAGgtgagttctt ... ttttgtacagGATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
EST: gi|161721523|gb|FC069739.1|FC069739
EST:     GAAGAAGATAAAG                         GATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
genomic: GAAGAAGATAAAGgtgagttctt ... ttttgtacagGATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
EST: gi|26257057|gb|CA808120.1|CA808120
EST:     TTCACAGGCGAAGAAGATAAAG                         GATCTGTTGTTGGTTTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
genomic: TTCACAGGCGAAGAAGATAAAGgtgagttctt ... ttttgtacagGATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
EST: gi|110723367|gb|EE100597.1|EE100597
EST:     TTCACAGGCGAAGAAGATAAAG                         GATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
genomic: TTCACAGGCGAAGAAGATAAAGgtgagttctt ... ttttgtacagGATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
EST: gi|351019333|gb|FQ429493.1|FQ429493
EST:     TTCACAGGCGAAGAAGATAAAG                         GATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
genomic: TTCACAGGCGAAGAAGATAAAGgtgagttctt ... ttttgtacagGATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
EST: gi|110688436|gb|EE066988.1|EE066988
EST:     TTCACAGGCGAAGAAGATAAAG                         GATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
genomic: TTCACAGGCGAAGAAGATAAAGgtgagttctt ... ttttgtacagGATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
EST: gi|71857981|gb|DT007036.1|DT007036
EST:     TTCACAGGCGAAGAAGATAAAG                         GATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
genomic: TTCACAGGCGAAGAAGATAAAGgtgagttctt ... ttttgtacagGATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTCACAGGCGAAGAAGATAAAGgtgagttctttcgctctttgtattttcgatcccgaaatctagggtaatttcttgaataatagccatgcagatccgttagatcaaccctaaattttcgcat

- - - - CGAAGA
- - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agggtaa