Sequence
atgc intronic sequence ATGC exonic sequenceAAGGATTTGAGCAGATCGGACGGTGGACCGCCCCGCTGGTTTTCGCCCTTGGAGTGCGGGACTCGGTTGGAAAACTCTCCTCTGCTTCTCTTTTTACCAGgtctttgccccgccactctttccttgattcatcttttcttctggtgaattttttttgatggaaactttaacaataaaacaaacagagccatgactggatt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0068g01440.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA16G05580.2 (Glycine max), 5'ss of exon 1
AAGGATTTGAGCAGATCGGACGGTGGACCGCCCCGCTGGTTTTCGCCCTTGGAGTGCGGGACTCGGTTGGAAAACTCTCCTCTGCTTCTCTTTTTACCAGgtctttgccccgccactctttccttgattcatcttttcttctggtgaattttttttgatggaaactttaacaataaaacaaacagagccatgactggatt--
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AAGGAGTTGATCAAACCGGACGGTGGACCGCCGCGGTGGTTTTCGCCGTTGGAGTGCGCTTCGCGATTGGACAACTCCCCTCTTCTGCTCTTTTTGCCAGgtaa--gttttttttttttttttttaatttattttactttttgctgttttgtcatgctttttgtgtgtgtgaatccttcagttatctttttgccgttatttt
upper sequence: Vv14s0068g01440.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA16G05570.1 (Glycine max), 5'ss of exon 1
AAGGATTTGAGCAGATCGGACGGTGGACCGCCCCGCTGGTTTTCGCCCTTGGAGTGCGGGACTCGGTTGGAAAACTCTCCTCTGCTTCTCTTTTTACCAGgtctttgccc-cgccactctttccttgattcatcttttcttctggtgaattttttttgatggaaactttaacaataaaacaaacagagccatgactggatt-
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AAGGAGCTGATTGAACCGGACGGTGGACCGCCGCGGTGGTTTTCGCCGTTGGAGTGCGCTTCGCGATTGGATAATTCTCCTCTTCTGCTCTTTTTGCCGGgtcagtatttgttttatttctgtcataatatttactatttagtatttgctttttatttattta--ctcgtgtgtcaacccttttggtcatatactcgtcgtt
upper sequence: Vv14s0068g01440.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA19G27200.1 (Glycine max), 5'ss of exon 1
AAGGATTTGAGCAGATCGGACGGTGGACCGCCCCGCTGGTTTTCGCCCTTGGAGTGCGGGACTCGGTTGGAAAACTCTCCTCTGCTTCTCTTTTTACCAGgt---ctttgccccgccactctttccttgattcatcttttcttctggtgaattttttttgatggaaactttaacaataaaacaaacagagccatgactggatt
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AAGGAGCTGATAGAACCGGACGGTGGACCGCCACGTTGGTTTTCGCCGTTGGAGTGCGCTTCCCGATTGGACTATTCTCCTCTTCTGCTCTTCTTGCCGGgtaagtatttttttttctttttcttttcaattataatattttactact--attttatttgttcttttttttttcctcctctgctttatggttgcgctctagt-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71862685|gb|DT011740.1|DT011740EST: GGAGTGCGGGACTCGGTTGGAAAACTCTCCTCTGCTTCTCTTTTTACCAG GGATTGATGGTGTTGGACTTGGACTTAGTATGCATC
genomic: GGAGTGCGGGACTCGGTTGGAAAACTCTCCTCTGCTTCTCTTTTTACCAGgtctttgccc ... aattttgcagGGATTGATGGTGTTGGACTTGGACTTAGTATGCATC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAGGATTTGAGCAGATCGGACGGTGGACCGCCCCGCTGGTTTTCGCCCTTGGAGTGCGGGACTCGGTTGGAAAACTCTCCTCTGCTTCTCTTTTTACCAGgtctttgccccgccactctttccttgattcatcttttcttctggtgaattttttttgatggaaactttaacaataaaacaaacagagccatgactggatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atggaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacaga