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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTGGTGGTTGTTTTGGGAATCAGTATCATGTCAACTGTGCAAGCACGCACTGGTAGACACAGGCAACGCTATGAGAACAACTTACGCCTTGTTTCTGGgtatgcatcctctcctctctctctctctctctcgttaccttctactcttcctttttgaagagcttttagctttgagctttctatttcatgtgtctgtaac...

Basic information

species Vitis vinifera
transcript Vv14s0068g00870.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32265358|gb|CD716211.1|CD716211
EST:     ACTGGTAGACACAGGCAACGCTATGAGAACAACTTACGCCTTGTTTCTGG                         ATGTATTCCTTACAGACAGACCAAGAACCATGAAGACCACAGCACTGATTT
genomic: ACTGGTAGACACAGGCAACGCTATGAGAACAACTTACGCCTTGTTTCTGGgtatgcatcc ... caaacaacagATGTATTCCTTACAGACAGACCAAGAACCATGAAGACCACAGCACTGATTT
EST: gi|30296756|gb|CB973550.1|CB973550
EST:     ACTGGTAGACACAGGCAACGCTATGAGAACAACTTACGCCTTGTTTCTGG                         ATGTATTCCTTACAGACAGACCAAGAACCATGAAGACCACAGCACTGATTT
genomic: ACTGGTAGACACAGGCAACGCTATGAGAACAACTTACGCCTTGTTTCTGGgtatgcatcc ... caaacaacagATGTATTCCTTACAGACAGACCAAGAACCATGAAGACCACAGCACTGATTT
EST: gi|110412202|gb|EC977942.1|EC977942
EST:     CCTTGTTTCTGG                         ATGTATTCCTTACAGACAGACCAAGAACCATGAAGACCACAGCACTGATTT
genomic: CCTTGTTTCTGGgtatgcatcc ... caaacaacagATGTATTCCTTACAGACAGACCAAGAACCATGAAGACCACAGCACTGATTT
EST: gi|32272355|gb|CD721514.1|CD721514
EST:     ACTGGTAGACACAGGCAACGCTATGAGAACAACTTACGCCTTGTTTCTGG                         ATGTATTCCTTACAGACAGACCAAGAACCATGAAGACCACAGCACTGATTT
genomic: ACTGGTAGACACAGGCAACGCTATGAGAACAACTTACGCCTTGTTTCTGGgtatgcatcc ... caaacaacagATGTATTCCTTACAGACAGACCAAGAACCATGAAGACCACAGCACTGATTT
EST: gi|30324328|gb|CD007590.1|CD007590
EST:     ACTGGTAGACACAGGCAACGCTATGAGAACAACTTACGCCTTGTTTCTGG                         ATGTATTCCTTACAGACAGACCAAGAACCATGAAGACCACAGCACTGATTT
genomic: ACTGGTAGACACAGGCAACGCTATGAGAACAACTTACGCCTTGTTTCTGGgtatgcatcc ... caaacaacagATGTATTCCTTACAGACAGACCAAGAACCATGAAGACCACAGCACTGATTT
EST: gi|110389979|gb|EC954859.1|EC954859
EST:     ACTGGTAGACACAGGCAACGCTATGAGAACAACTTACGCCTTGTTTCTGG                         ATGTATTCCTTACAGACAGACCAAGAACCATGAAGACCACAGCACTGATTT
genomic: ACTGGTAGACACAGGCAACGCTATGAGAACAACTTACGCCTTGTTTCTGGgtatgcatcc ... caaacaacagATGTATTCCTTACAGACAGACCAAGAACCATGAAGACCACAGCACTGATTT
EST: gi|110417324|gb|EC983371.1|EC983371
EST:     ACTGGTAGACACAGGCAACGCTATGAGAACAACTTACGCCTTGTTTCTGG                         ATGTATTCCTTACAGACAGACCAAGAACCATGAAGACCACAGCACTGATTT
genomic: ACTGGTAGACACAGGCAACGCTATGAGAACAACTTACGCCTTGTTTCTGGgtatgcatcc ... caaacaacagATGTATTCCTTACAGACAGACCAAGAACCATGAAGACCACAGCACTGATTT
EST: gi|77587339|gb|DV222811.1|DV222811
EST:     AACTTACGCCTTGTTTCTGG                         ATGTATTCCTTACAGACAGACCAAGAACCATGAAGACCACAGCACTGATTT
genomic: AACTTACGCCTTGTTTCTGGgtatgcatcc ... caaacaacagATGTATTCCTTACAGACAGACCAAGAACCATGAAGACCACAGCACTGATTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TATTGGTGGTTGTTTTGGGAATCAGTATCATGTCAACTGTGCAAGCACGCACTGGTAGACACAGGCAACGCTATGAGAACAACTTACGCCTTGTTTCTGGgtatgcatcctctcctctctctctctctctctcgttaccttctactcttcctttttgaagagcttttagctttgagctttctatttcatgtgtctgtaac

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcttcc