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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACTTCTGGGTCCAAGAAAAATTCGCTGCCCAGGAGTTCTAGCTCTAGGGCTCGCTCTCTCACTGATCCTCTGCTTCAGCCTCAGCAGCTTGTTAATCAGgtttggtttgtttttttttcccctctctttctggcctttttggaaattttgattgtcgaatttgatattagtctgaggattgcacgtgggtttttttttt...

Basic information

species Vitis vinifera
transcript Vv14s0068g00390.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71857051|gb|DT006106.1|DT006106
EST:     CTCGCTCTCTCACTGATCCTCTGCTTCAGCCTCAGCAGCTTGTTAATCAG                         GATGTGAAGCTTGATGATCTAGAGACCAACCATTTTGTCCTTGTCCATGGA
genomic: CTCGCTCTCTCACTGATCCTCTGCTTCAGCCTCAGCAGCTTGTTAATCAGgtttggtttg ... tctttgacagGATGTGAAGCTTGATGATCTAGAGACCAACCATTTTGTCCTTGTCCATGGA
EST: gi|71855549|gb|DT004604.1|DT004604
EST:     CTCGCTCTCTCACTGATCCTCTGCTTCAGCCTCAGCAGCTTGTTAATCAG                         GATGTGAAGCTTGATGATCTAGAGACCAACCATTTTGTCCTTGTCCATG
genomic: CTCGCTCTCTCACTGATCCTCTGCTTCAGCCTCAGCAGCTTGTTAATCAGgtttggtttg ... tctttgacagGATGTGAAGCTTGATGATCTAGAGACCAACCATTTTGTCCTTGTCCATG
EST: gi|294966364|gb|GW837615.1|GW837615
EST:     CTCGCTCTCTCACTGATCCTCTGCTTCAGCCTCAGCAGCTTGTTAATCAG                         GATGTGAAGCTTGATGATCTAGAGACCAACCATTTTGTCCTTGTCCATGGA
genomic: CTCGCTCTCTCACTGATCCTCTGCTTCAGCCTCAGCAGCTTGTTAATCAGgtttggtttg ... tctttgacagGATGTGAAGCTTGATGATCTAGAGACCAACCATTTTGTCCTTGTCCATGGA
EST: gi|71856594|gb|DT005649.1|DT005649
EST:     CTCGCTCTCTCACTGATCCTCTGCTTCAGCCTCAGCAGCTTGTTAATCAG                         GATGTGAAGCTTGATGATCTAGAGACCAACCATTTTGTCCTTGTCCATGGA
genomic: CTCGCTCTCTCACTGATCCTCTGCTTCAGCCTCAGCAGCTTGTTAATCAGgtttggtttg ... tctttgacagGATGTGAAGCTTGATGATCTAGAGACCAACCATTTTGTCCTTGTCCATGGA
EST: gi|30133844|gb|CB919183.1|CB919183
EST:     CTCGCTCTCTCACTGATCCTCTGCTTCAGCCTCAGCAGCTTGTTAATCAG                         GATGTGAAGCTTGATGATCTAGAGACCAACCATTTTGTCCTTGTCCATGGA
genomic: CTCGCTCTCTCACTGATCCTCTGCTTCAGCCTCAGCAGCTTGTTAATCAGgtttggtttg ... tctttgacagGATGTGAAGCTTGATGATCTAGAGACCAACCATTTTGTCCTTGTCCATGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CACTTCTGGGTCCAAGAAAAATTCGCTGCCCAGGAGTTCTAGCTCTAGGGCTCGCTCTCTCACTGATCCTCTGCTTCAGCCTCAGCAGCTTGTTAATCAGgtttggtttgtttttttttcccctctctttctggcctttttggaaattttgattgtcgaatttgatattagtctgaggattgcacgtgggtttttttttt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttggaaa