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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGTTGAAGCCCGAGATGGATGCAGACGCCTATGACATTGAGGATGGCTCAAGTTTCCCAATGGTCCTTGTTCAGATTCCAATGTGCAATGAAAAAGAGgtaatcccaccttcactctagattctttctgaattttcttgggataaaggaaaatgaaagtgaaattttacagccttctgttgcttgattttgatctgatgcatacatattgtgtggtatgaag

Basic information

species Vitis vinifera
transcript Vv14s0066g01730.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0066g01730.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA19G01560.1 (Glycine max), 5'ss of exon 1
GAAGTTGAAGCCCGAGATGGATGCAGACGCCTATGACATTGAGGATGGCTCAAGTTTCCCAATGGTCCTTGTTCAGATTCCAATGTGCAATGAAAAAGAGgtaatcccaccttcactctagattctttctgaattttcttgggataaaggaaaatgaaagtgaaattttacagccttctgttgcttgattttgatctgatgcatacatattgtgtggtatgaag
||||||||||||     | || ||||| || | |||  |||||||    ||||  |||||||||||||||||||||||||| ||||||||||| | ||||||||    | |   | |  |                 ||||  ||||     | | | | |   ||| |      ||   |||    || ||  | |  |  | | || |    |||       
GAAGTTGAAGCCAACCTTTGAGGCAGATGCATGTGATGTTGAGGACCCTTCAAACTTCCCAATGGTCCTTGTTCAGATTCCCATGTGCAATGAGAGAGAGgtaacagaatcaatattgcaa----------------cttgccataactatgattaagattatgattatgatttttttcattgacaaatgttagttttgt-tagaaatgtcacttgg-------

upper sequence: Vv14s0066g01730.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA13G04480.1 (Glycine max), 5'ss of exon 1
GAAGTTGAAGCCCGAGATGGATGCAGACGCCTATGACATTGAGGATGGCTCAAGTTTCCCAATGGTCCTTGTTCAGATTCCAATGTGCAATGAAAAAGAGgtaatcccaccttcactctagattctttctgaattttcttgggataaaggaaaatgaaagtgaaattttacagccttctgttgcttgattttgatctgatgcatacatattgtgtggtatgaag
||||||||||||     | |||||||| || | |||  ||||||||   ||||  |||||||||||||||||||||||||| ||||||||||| | ||||||||    | |  || |  || ||  |  ||| | |  ||  ||| |       |||   |    | | |||    |  |||  ||  ||||| |  ||    | ||| |              
GAAGTTGAAGCCAACCTTTGATGCAGATGCATGTGATGTTGAGGATCCTTCAAACTTCCCAATGGTCCTTGTTCAGATTCCCATGTGCAATGAGAGAGAGgtaacagaatcaacattgcagcttgcta-tgactatgattaagatta-------tgatttttttttatcacaaatgttagttagttagttttg-ttagaaatgt-cattt--------------